diff options
| author | Petar Petrov <ppetrov@paju.oulu.fi> | 2011-10-29 20:03:22 -0200 |
|---|---|---|
| committer | Niels Horn <niels.horn@slackbuilds.org> | 2011-10-29 20:03:22 -0200 |
| commit | 672980952c420e4377ca028f1a82b7cac6844ce2 (patch) | |
| tree | 91b0a0b5ab45f1a93d2ecab19d293c926efd474c /academic/genpak | |
| parent | d97b36a82b3d0a9adaec53adc20c178623d7395c (diff) | |
| download | slackbuilds-672980952c420e4377ca028f1a82b7cac6844ce2.tar.gz | |
academic/genpak: Several fixes + adding html.
Signed-off-by: Niels Horn <niels.horn@slackbuilds.org>
Diffstat (limited to 'academic/genpak')
| -rw-r--r-- | academic/genpak/README | 4 | ||||
| -rw-r--r-- | academic/genpak/genpak.SlackBuild | 9 | ||||
| -rw-r--r-- | academic/genpak/genpak.info | 2 | ||||
| -rw-r--r-- | academic/genpak/slack-desc | 2 |
4 files changed, 11 insertions, 6 deletions
diff --git a/academic/genpak/README b/academic/genpak/README index 39ec806ab9..583261ae98 100644 --- a/academic/genpak/README +++ b/academic/genpak/README @@ -6,5 +6,5 @@ determine codon usage / GC contents, do promotor searches, calculate Tm, search for restriction sites, convert sequences into numerical representations and much more. -You most likely want to install arka, which provides a GUI for genpak. -arka is also available at SlackBuilds.org. +You most likely want to install arka, which provides a GUI for GenPak. +Arka is also available at SlackBuilds.org. diff --git a/academic/genpak/genpak.SlackBuild b/academic/genpak/genpak.SlackBuild index e0d6163283..84509b7085 100644 --- a/academic/genpak/genpak.SlackBuild +++ b/academic/genpak/genpak.SlackBuild @@ -10,7 +10,7 @@ PRGNAM=genpak VERSION=${VERSION:-0.26} -BUILD=${BUILD:-2} +BUILD=${BUILD:-3} TAG=${TAG:-_SBo} if [ -z "$ARCH" ]; then @@ -60,6 +60,8 @@ sed -i "/^CFLAGS/s/=/+=/" Makefile # Correct libdir sed -i "s:/lib:/lib${LIBDIRSUFFIX}:" Makefile +sed -i "s:/lib:/lib${LIBDIRSUFFIX}:" src/genpak.c +sed -i "s:/lib:/lib${LIBDIRSUFFIX}:" src/genpak.h CFLAGS="$SLKCFLAGS" \ CXXFLAGS="$SLKCFLAGS" \ @@ -74,6 +76,7 @@ install -D -m755 gp_cusage $PKG/usr/bin/gp_cusage install -D -m755 gp_digest $PKG/usr/bin/gp_digest install -D -m755 gp_dimer $PKG/usr/bin/gp_dimer install -D -m755 gp_findorf $PKG/usr/bin/gp_findorf +install -D -m755 gp_gc $PKG/usr/bin/gp_gc install -D -m755 gp_getseq $PKG/usr/bin/gp_getseq install -D -m755 gp_matrix $PKG/usr/bin/gp_matrix install -D -m755 gp_mkmtx $PKG/usr/bin/gp_mkmtx @@ -93,6 +96,8 @@ cd ../data install -D -m644 ecoli.mtx $PKG/usr/lib${LIBDIRSUFFIX}/genpak/ecoli.mtx install -D -m644 enzyme.enz $PKG/usr/lib${LIBDIRSUFFIX}/genpak/enzyme.enz install -D -m644 myco.cdn $PKG/usr/lib${LIBDIRSUFFIX}/genpak/myco.cdn +install -D -m644 myco.mtx $PKG/usr/lib${LIBDIRSUFFIX}/genpak/myco.mtx +install -D -m644 myco0 $PKG/usr/lib${LIBDIRSUFFIX}/genpak/myco0 install -D -m644 sample.seq $PKG/usr/lib${LIBDIRSUFFIX}/genpak/sample.seq install -D -m644 standard.cdn $PKG/usr/lib${LIBDIRSUFFIX}/genpak/standard.cdn install -D -m644 mporfs.seq $PKG/usr/lib${LIBDIRSUFFIX}/genpak/mporfs.seq @@ -110,7 +115,7 @@ for i in $( find $PKG/usr/man -type l ) ; do ln -s $( readlink $i ).gz $i.gz ; r mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION cp -a \ - CHANGES.TXT INSTALL.TXT LICENSE.TXT README.TXT \ + html CHANGES.TXT INSTALL.TXT LICENSE.TXT README.TXT \ $PKG/usr/doc/$PRGNAM-$VERSION/ cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild diff --git a/academic/genpak/genpak.info b/academic/genpak/genpak.info index 9bb1161833..4f0075bb34 100644 --- a/academic/genpak/genpak.info +++ b/academic/genpak/genpak.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" MAINTAINER="Petar Petrov" EMAIL="ppetrov@paju.oulu.fi" -APPROVED="Niels Horn,Erik Hanson" +APPROVED="Erik Hanson,Niels Horn" diff --git a/academic/genpak/slack-desc b/academic/genpak/slack-desc index 4df3bad496..f36088d51d 100644 --- a/academic/genpak/slack-desc +++ b/academic/genpak/slack-desc @@ -16,4 +16,4 @@ genpak: genpak: genpak: genpak: -genpak: Home: http://www.bioinformatics.org/genpak/
\ No newline at end of file +genpak: Home: http://www.bioinformatics.org/genpak/ |