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authorPetar Petrov <ppetrov@paju.oulu.fi>2011-10-29 20:03:22 -0200
committerNiels Horn <niels.horn@slackbuilds.org>2011-10-29 20:03:22 -0200
commit672980952c420e4377ca028f1a82b7cac6844ce2 (patch)
tree91b0a0b5ab45f1a93d2ecab19d293c926efd474c /academic/genpak
parentd97b36a82b3d0a9adaec53adc20c178623d7395c (diff)
downloadslackbuilds-672980952c420e4377ca028f1a82b7cac6844ce2.tar.gz
academic/genpak: Several fixes + adding html.
Signed-off-by: Niels Horn <niels.horn@slackbuilds.org>
Diffstat (limited to 'academic/genpak')
-rw-r--r--academic/genpak/README4
-rw-r--r--academic/genpak/genpak.SlackBuild9
-rw-r--r--academic/genpak/genpak.info2
-rw-r--r--academic/genpak/slack-desc2
4 files changed, 11 insertions, 6 deletions
diff --git a/academic/genpak/README b/academic/genpak/README
index 39ec806ab9..583261ae98 100644
--- a/academic/genpak/README
+++ b/academic/genpak/README
@@ -6,5 +6,5 @@ determine codon usage / GC contents, do promotor searches, calculate
Tm, search for restriction sites, convert sequences into numerical
representations and much more.
-You most likely want to install arka, which provides a GUI for genpak.
-arka is also available at SlackBuilds.org.
+You most likely want to install arka, which provides a GUI for GenPak.
+Arka is also available at SlackBuilds.org.
diff --git a/academic/genpak/genpak.SlackBuild b/academic/genpak/genpak.SlackBuild
index e0d6163283..84509b7085 100644
--- a/academic/genpak/genpak.SlackBuild
+++ b/academic/genpak/genpak.SlackBuild
@@ -10,7 +10,7 @@
PRGNAM=genpak
VERSION=${VERSION:-0.26}
-BUILD=${BUILD:-2}
+BUILD=${BUILD:-3}
TAG=${TAG:-_SBo}
if [ -z "$ARCH" ]; then
@@ -60,6 +60,8 @@ sed -i "/^CFLAGS/s/=/+=/" Makefile
# Correct libdir
sed -i "s:/lib:/lib${LIBDIRSUFFIX}:" Makefile
+sed -i "s:/lib:/lib${LIBDIRSUFFIX}:" src/genpak.c
+sed -i "s:/lib:/lib${LIBDIRSUFFIX}:" src/genpak.h
CFLAGS="$SLKCFLAGS" \
CXXFLAGS="$SLKCFLAGS" \
@@ -74,6 +76,7 @@ install -D -m755 gp_cusage $PKG/usr/bin/gp_cusage
install -D -m755 gp_digest $PKG/usr/bin/gp_digest
install -D -m755 gp_dimer $PKG/usr/bin/gp_dimer
install -D -m755 gp_findorf $PKG/usr/bin/gp_findorf
+install -D -m755 gp_gc $PKG/usr/bin/gp_gc
install -D -m755 gp_getseq $PKG/usr/bin/gp_getseq
install -D -m755 gp_matrix $PKG/usr/bin/gp_matrix
install -D -m755 gp_mkmtx $PKG/usr/bin/gp_mkmtx
@@ -93,6 +96,8 @@ cd ../data
install -D -m644 ecoli.mtx $PKG/usr/lib${LIBDIRSUFFIX}/genpak/ecoli.mtx
install -D -m644 enzyme.enz $PKG/usr/lib${LIBDIRSUFFIX}/genpak/enzyme.enz
install -D -m644 myco.cdn $PKG/usr/lib${LIBDIRSUFFIX}/genpak/myco.cdn
+install -D -m644 myco.mtx $PKG/usr/lib${LIBDIRSUFFIX}/genpak/myco.mtx
+install -D -m644 myco0 $PKG/usr/lib${LIBDIRSUFFIX}/genpak/myco0
install -D -m644 sample.seq $PKG/usr/lib${LIBDIRSUFFIX}/genpak/sample.seq
install -D -m644 standard.cdn $PKG/usr/lib${LIBDIRSUFFIX}/genpak/standard.cdn
install -D -m644 mporfs.seq $PKG/usr/lib${LIBDIRSUFFIX}/genpak/mporfs.seq
@@ -110,7 +115,7 @@ for i in $( find $PKG/usr/man -type l ) ; do ln -s $( readlink $i ).gz $i.gz ; r
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
cp -a \
- CHANGES.TXT INSTALL.TXT LICENSE.TXT README.TXT \
+ html CHANGES.TXT INSTALL.TXT LICENSE.TXT README.TXT \
$PKG/usr/doc/$PRGNAM-$VERSION/
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
diff --git a/academic/genpak/genpak.info b/academic/genpak/genpak.info
index 9bb1161833..4f0075bb34 100644
--- a/academic/genpak/genpak.info
+++ b/academic/genpak/genpak.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
MAINTAINER="Petar Petrov"
EMAIL="ppetrov@paju.oulu.fi"
-APPROVED="Niels Horn,Erik Hanson"
+APPROVED="Erik Hanson,Niels Horn"
diff --git a/academic/genpak/slack-desc b/academic/genpak/slack-desc
index 4df3bad496..f36088d51d 100644
--- a/academic/genpak/slack-desc
+++ b/academic/genpak/slack-desc
@@ -16,4 +16,4 @@ genpak:
genpak:
genpak:
genpak:
-genpak: Home: http://www.bioinformatics.org/genpak/ \ No newline at end of file
+genpak: Home: http://www.bioinformatics.org/genpak/