academic/genometools: Added (collection of bio-informatics tools).

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>

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+GenomeTools publication
+G. Gremme, S. Steinbiss and S. Kurtz.
+GenomeTools: a comprehensive software library for efficient processing of structured genome annotations.
+IEEE/ACM Transactions on Computational Biology and Bioinformatics 2013, in press.
+Published software in GenomeTools
+
+The GenomeTools distribution includes several published software tools:
+
+    ltrharvest, an efficient and flexible software tool for de novo detection of LTR retrotransposons.
+    D. Ellinghaus, S. Kurtz, and U. Willhoeft.
+    LTRharvest, a efficient and flexible software for de novo detection of LTR retrotransposons.
+    BMC Bioinformatics 2008, 9:18
+    tallymer, a collection of flexible and memory-efficient programs for k-mer counting and indexing of large sequence sets.
+    S. Kurtz, A. Narechania, J.C. Stein, and D. Ware.
+    A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes.
+    BMC Genomics 2008, 9:517
+    uniquesub, a program for computing minimum unique substrings.
+    S. Gräf, F.G.G. Nielsen, S. Kurtz, M.A. Huynen, E. Birney, H. Stunnenberg, and P. Flicek.
+    Optimized design and assessment of whole genome tiling arrays.
+    Bioinformatics 2007, 23(13):i195–i204
+    AnnotationSketch, a library for drawing genome annotations.
+    S. Steinbiss, G. Gremme, C. Schärfer, M. Mader and S. Kurtz.
+    AnnotationSketch: a genome annotation drawing library.
+    Bioinformatics 2009, 25(4):533–534
+    ltrdigest, a software tool for automated annotation of internal features of LTR retrotransposons.
+    S. Steinbiss, U. Willhoeft, G. Gremme and S. Kurtz.
+    Fine-grained annotation and classification of de novo predicted LTR retrotransposons.
+    Nucleic Acids Research 2009, 37(21):7002–7013
+    MetaGenomeThreader, a software to predict genes, such as PCS's (predicted coding sequences) in sequences of metagenome projects.
+    D.J. Schmitz-Hübsch and S. Kurtz.
+    MetaGenomeThreader: A software tool for predicting genes in DNA-sequences of metagenome projects.
+    In R. Daniel and W. Streit (Eds.), Metagenomics. Methods in Molecular Biology, 325–338, Humana Press, Totowa, NJ, ISBN 978-1-60761-822-5
+    GtEncseq, a compressed biosequence representation with many features.
+    S. Steinbiss and S. Kurtz.
+    A New Efficient Data Structure for Storage and Retrieval of Multiple Biosequences.
+    IEEE/ACM Transactions on Computational Biology and Bioinformatics 2012, 9(2):345–357
+    Readjoiner, a sequence assembler based on the assembly string graph framework.
+    G. Gonnella and S. Kurtz.
+    Readjoiner: a fast and memory efficient string graph-based sequence assembler.
+    BMC Bioinformatics 2012, 13:82
+
+The following software tools are based on the GenomeTools library:
+
+    FISH Oracle, a web server for visualizing cancer genomics data.
+    M. Mader, R. Simon, S. Steinbiss and S. Kurtz.
+    FISH Oracle: a web server for flexible visualization of DNA copy number data in a genomic context.
+    Journal of Clinical Bioinformatics 2011, 1:20
+    ParsEval, a tool for comparing genome annotations.
+    D.S. Standage and V.P. Brendel.
+    ParsEval: parallel comparison and analysis of gene structure annotations.
+    BMC Bioinformatics 2012, 13:187
+    LTRsift, a graphical interface for working with LTR retrotransposon predictions.
+    S. Steinbiss, S. Kastens and S. Kurtz.
+    LTRsift: a graphical user interface for semi-automatic classification and postprocessing of de novo detected LTR retrotransposons.
+    Mobile DNA 2012, 3:18