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| author | Rob van Nues <rvnues at tesco {dot} net> | 2017-09-10 12:44:14 +0100 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2017-09-16 07:15:01 +0700 |
| commit | 87f60da8dead64a7e438ea4e1186807adb7c7212 (patch) | |
| tree | 19fb453af5a4a1093e10f277fa60ae3a197397c9 /academic/flexbar/README | |
| parent | 6b9af1ae138ce226ad2a58869330cb5ca437ea92 (diff) | |
| download | slackbuilds-87f60da8dead64a7e438ea4e1186807adb7c7212.tar.gz | |
academic/flexbar: Added (barcode and adapter removal).
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
Diffstat (limited to 'academic/flexbar/README')
| -rw-r--r-- | academic/flexbar/README | 18 |
1 files changed, 18 insertions, 0 deletions
diff --git a/academic/flexbar/README b/academic/flexbar/README new file mode 100644 index 0000000000..ed016820d8 --- /dev/null +++ b/academic/flexbar/README @@ -0,0 +1,18 @@ +The program Flexbar preprocesses high-throughput sequencing data +efficiently. It demultiplexes barcoded runs and removes adapter +sequences. Moreover, trimming and filtering features are provided. +Flexbar increases read mapping rates and improves genome as well as +transcriptome assemblies. It supports next-generation sequencing data +in fasta and fastq format, e.g. from Roche 454 and the Illumina +platform. + +The script downloads the segan-library needed for compilation. + +References + +Johannes T. Roehr, Christoph Dieterich, Knut Reinert: +Flexbar 3.0 - SIMD and multicore parallelization. Bioinformatics 2017. + +Matthias Dodt, Johannes T. Roehr, Rina Ahmed, Christoph Dieterich: +Flexbar - flexible barcode and adapter processing for next-generation +sequencing platforms. Biology 2012. |