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authorPetar Petrov <petar.petrov@student.oulu.fi>2015-04-11 18:23:57 +0700
committerWilly Sudiarto Raharjo <willysr@slackbuilds.org>2015-04-11 18:23:57 +0700
commit465af7bca3c7d188b6090afee5f3d4af8ac358ea (patch)
tree94c8420e1d18e109296d665e05a3709192962cab /academic/fastqc
parent10195076aacedb462a041ff1af13bb077530a4ab (diff)
downloadslackbuilds-465af7bca3c7d188b6090afee5f3d4af8ac358ea.tar.gz
academic/fastqc: Updated for version 0.11.3.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/fastqc')
-rw-r--r--academic/fastqc/fastqc.SlackBuild7
-rw-r--r--academic/fastqc/fastqc.info6
2 files changed, 7 insertions, 6 deletions
diff --git a/academic/fastqc/fastqc.SlackBuild b/academic/fastqc/fastqc.SlackBuild
index b489ef39ec..0e856b60bd 100644
--- a/academic/fastqc/fastqc.SlackBuild
+++ b/academic/fastqc/fastqc.SlackBuild
@@ -24,8 +24,8 @@
PRGNAM=fastqc
SRCNAM=FastQC
-VERSION=${VERSION:-0.11.2}
-SRCVER=${SRCVER:-v0.11.2}
+VERSION=${VERSION:-0.11.3}
+SRCVER=${SRCVER:-v0.11.3}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
@@ -35,6 +35,7 @@ ARCH=noarch
# Jar files names and versions
JBZIP=jbzip2-0.9.jar
SAM=sam-1.103.jar
+CISD=cisd-jhdf5.jar
CWD=$(pwd)
TMP=${TMP:-/tmp/SBo}
@@ -57,7 +58,7 @@ find -L . \
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
install -D -m755 $PRGNAM $PKG/usr/share/java/$PRGNAM/$PRGNAM
-cp -a Configuration net org Templates uk $JBZIP $SAM $PKG/usr/share/java/$PRGNAM
+cp -a Configuration net org Templates uk $JBZIP $SAM $CISD $PKG/usr/share/java/$PRGNAM
mkdir -p $PKG/usr/bin
cd $PKG/usr/bin
diff --git a/academic/fastqc/fastqc.info b/academic/fastqc/fastqc.info
index d9c10eca67..e13692be3f 100644
--- a/academic/fastqc/fastqc.info
+++ b/academic/fastqc/fastqc.info
@@ -1,8 +1,8 @@
PRGNAM="fastqc"
-VERSION="0.11.2"
+VERSION="0.11.3"
HOMEPAGE="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/"
-DOWNLOAD="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.2.zip"
-MD5SUM="8686e180a2d7c818821eb7db194d9488"
+DOWNLOAD="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.3.zip"
+MD5SUM="e66416b739c434d523ccc1a814d716ab"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="jdk"