academic/copasi: Added (modeling/simulation of biochemical networks)

Signed-off-by: Robby Workman <rworkman@slackbuilds.org>

1 files changed, 80 insertions, 0 deletions

diff --git a/academic/copasi/copasi.SlackBuild b/academic/copasi/copasi.SlackBuild
new file mode 100644
index 0000000000..3bd13424e4
--- /dev/null
+++ b/academic/copasi/copasi.SlackBuild
@@ -0,0 +1,80 @@
+#!/bin/sh
+
+# Slackware build script for copasi
+
+# Copyright 2011 Pedro Mendes, Blacksburg, Virginia, USA
+# All rights reserved.
+#
+# Redistribution and use of this script, with or without modification, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+#    notice, this list of conditions and the following disclaimer.
+#
+#  THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
+#  WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+#  MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO
+#  EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+#  SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+#  PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+#  OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+#  WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+#  OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+#  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+PRGNAM=copasi
+VERSION=35
+BUILD=${BUILD:-1}
+TAG=${TAG:-_SBo}
+
+case "$(uname -m)" in
+  i?86) ARCH=i486 ;;
+  arm*) ARCH=arm ;;
+     *) ARCH=$(uname -m) ;;
+esac
+
+CWD=$(pwd)
+TMP=${TMP:-/tmp/SBo}
+PKG=$TMP/package-$PRGNAM
+OUTPUT=${OUTPUT:-/tmp}
+
+if [ "$ARCH" = "i486" ]; then
+  BINNAME="Linux-Dynamic"
+elif [ "$ARCH" = "x86_64" ]; then
+  BINNAME="Linux64-Dynamic"
+else
+  echo "$ARCH is not supported by the $PRGNAM build script..."
+  exit 1
+fi
+
+# This is a repackage of a binary distribution
+# CFLAGS are not required
+
+set -e
+
+rm -rf $PKG
+mkdir -p $TMP $PKG $OUTPUT
+cd $TMP
+rm -rf $PRGNAM-$VERSION
+tar xvf $CWD/Copasi-$VERSION-$BINNAME.tar.gz
+mv $PRGNAM $PRGNAM-$VERSION
+cd $PRGNAM-$VERSION
+chown -R root:root .
+chmod -R u+w,go+r-w,a-s .
+
+mkdir -p $PKG/usr/bin $PKG/usr/share/{copasi,pixmaps,applications}
+cp -a bin/* $PKG/usr/bin/
+cp -r share/copasi $PKG/usr/share
+cp $CWD/copasi.desktop $PKG/usr/share/applications/copasi.desktop
+cp share/copasi/icons/Copasi48-Alpha.xpm $PKG/usr/share/pixmaps/copasi.xpm
+
+mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
+cp -a LICENSE README $PKG/usr/doc/$PRGNAM-$VERSION
+cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
+
+mkdir -p $PKG/install
+cat $CWD/slack-desc > $PKG/install/slack-desc
+cat $CWD/doinst.sh > $PKG/install/doinst.sh
+
+cd $PKG
+/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}