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authorPetar Petrov <petar.petrov@student.oulu.fi>2014-03-03 01:31:21 +0700
committerWilly Sudiarto Raharjo <willysr@slackbuilds.org>2014-03-03 01:31:21 +0700
commit282a9d6a0180780c6aa0776bb76ed65d1d55843a (patch)
tree88aeab38924379ae9388bf01b61d0f68d1d26546 /academic/clustalo
parentd903bd6c78f455e0e0e14e5d97792c78c261bfb4 (diff)
downloadslackbuilds-282a9d6a0180780c6aa0776bb76ed65d1d55843a.tar.gz
academic/clustalo: Updated for version 1.2.1.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/clustalo')
-rw-r--r--academic/clustalo/README6
-rw-r--r--academic/clustalo/clustalo.SlackBuild14
-rw-r--r--academic/clustalo/clustalo.info8
3 files changed, 16 insertions, 12 deletions
diff --git a/academic/clustalo/README b/academic/clustalo/README
index 15af464b48..f7a9064157 100644
--- a/academic/clustalo/README
+++ b/academic/clustalo/README
@@ -5,8 +5,10 @@ allowing hundreds of thousands of sequences to be aligned in only a
few hours. In addition, the quality of alignments is superior to
previous versions, as measured by a range of popular benchmarks.
-Clustal Omega is currently a command line-only tool, and is only
-suitable for aligning protein sequences, not DNA or RNA.
+Clustal Omega is currently a command line-only tool, but the following
+independent programs provide an easy to use GUI:
+- seaview
+- ugene
If you like Clustal-Omega please cite:
diff --git a/academic/clustalo/clustalo.SlackBuild b/academic/clustalo/clustalo.SlackBuild
index 4a50ef8ab4..3ed997060f 100644
--- a/academic/clustalo/clustalo.SlackBuild
+++ b/academic/clustalo/clustalo.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for clustalo
-# Copyright 2011-2013 Petar Petrov, ppetrov@paju.oulu.fi
+# Copyright 2011-2014 Petar Petrov, petar.petrov@student.oulu.fi
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
@@ -23,7 +23,7 @@
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=clustalo
-VERSION=${VERSION:-1.2.0}
+VERSION=${VERSION:-1.2.1}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
@@ -66,13 +66,15 @@ tar xvf $CWD/$SRCNAM-$VERSION.tar.gz
cd $SRCNAM-$VERSION
chown -R root:root .
find -L . \
- \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 -o -perm 511 \) \
- -exec chmod 755 {} \; -o \
- \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \
- -exec chmod 644 {} \;
+ \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
+ -o -perm 511 \) -exec chmod 755 {} \; -o \
+ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
+ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
CFLAGS="$SLKCFLAGS" \
CXXFLAGS="$SLKCFLAGS" \
+AM_CFLAGS="$SLKCFLAGS" \
+AM_CXXFLAGS="$SLKCFLAGS" \
./configure \
--prefix=/usr \
--libdir=/usr/lib${LIBDIRSUFFIX} \
diff --git a/academic/clustalo/clustalo.info b/academic/clustalo/clustalo.info
index eddaff6e5b..e43a00d763 100644
--- a/academic/clustalo/clustalo.info
+++ b/academic/clustalo/clustalo.info
@@ -1,10 +1,10 @@
PRGNAM="clustalo"
-VERSION="1.2.0"
+VERSION="1.2.1"
HOMEPAGE="http://www.clustal.org/omega/"
-DOWNLOAD="http://www.clustal.org/omega/clustal-omega-1.2.0.tar.gz"
-MD5SUM="23d03e5512c86f7175a148930e210fab"
+DOWNLOAD="http://www.clustal.org/omega/clustal-omega-1.2.1.tar.gz"
+MD5SUM="7ea360ef0c615d3a07c872e2345df3e1"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="argtable"
MAINTAINER="Petar Petrov"
-EMAIL="ppetrov@paju.oulu.fi"
+EMAIL="petar.petrov@student.oulu.fi"