academic/cholmod: Renamed and moved from libraries.

Signed-off-by: Robby Workman <rworkman@slackbuilds.org>

6 files changed, 1799 insertions, 0 deletions

diff --git a/academic/cholmod/README b/academic/cholmod/README
new file mode 100644
index 0000000000..ebbb152bc3
--- /dev/null
+++ b/academic/cholmod/README
@@ -0,0 +1,6 @@
+CHOLMOD is a set of ANSI C routines for sparse Cholesky factorization and
+update/downdate.
+
+This package is part of SuiteSparse.
+
+metis is an optional dependency and will be used if found.
diff --git a/academic/cholmod/atlas-threaded-blas.diff b/academic/cholmod/atlas-threaded-blas.diff
new file mode 100644
index 0000000000..e7f34ef011
--- /dev/null
+++ b/academic/cholmod/atlas-threaded-blas.diff
@@ -0,0 +1,26 @@
+diff --git a/ax_blas.m4 b/ax_blas.m4
+--- a/ax_blas.m4
++++ b/ax_blas.m4
+@@ -117,12 +117,16 @@
+ # BLAS in ATLAS library? (http://math-atlas.sourceforge.net/)
+ if test $ax_blas_ok = no; then
+ 	AC_CHECK_LIB(atlas, ATL_xerbla,
+-		[AC_CHECK_LIB(f77blas, $sgemm,
+-		[AC_CHECK_LIB(cblas, cblas_dgemm,
+-			[ax_blas_ok=yes
+-			 BLAS_LIBS="-lcblas -lf77blas -latlas"],
+-			[], [-lf77blas -latlas])],
+-			[], [-latlas])])
++		[AC_CHECK_LIB(ptf77blas, $sgemm,
++			[AC_CHECK_LIB(ptcblas, cblas_dgemm,
++				[ax_blas_ok=yes; BLAS_LIBS="-lptcblas -lptf77blas -latlas"],,
++				[-lptf77blas -latlas])],
++			[AC_CHECK_LIB(f77blas, $sgemm,
++				[AC_CHECK_LIB(cblas, cblas_dgemm,
++					[ax_blas_ok=yes; BLAS_LIBS="-lcblas -lf77blas -latlas"],,
++					[-lf77blas -latlas])],,
++				[-latlas])],
++			[-latlas])])
+ fi
+ 
+ # BLAS in PhiPACK libraries? (requires generic BLAS lib, too)
diff --git a/academic/cholmod/autotoolize.diff b/academic/cholmod/autotoolize.diff
new file mode 100644
index 0000000000..5e93cf2f1c
--- /dev/null
+++ b/academic/cholmod/autotoolize.diff
@@ -0,0 +1,1625 @@
+diff --git a/Check/Makefile.am b/Check/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Check/Makefile.am
+@@ -0,0 +1,24 @@
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS)
++
++EXTRA_DIST = \
++	License.txt \
++	lesser.txt
++
++CHECKSRC = \
++	cholmod_check.c \
++	cholmod_read.c \
++	cholmod_write.c
++
++noinst_LTLIBRARIES = \
++	libchecki.la \
++	libcheckl.la \
++	libcheck.la
++
++libchecki_la_SOURCES = $(CHECKSRC)
++libchecki_la_CPPFLAGS= $(AM_CPPFLAGS)
++
++libcheckl_la_SOURCES = $(CHECKSRC)
++libcheckl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
++
++libcheck_la_SOURCES =
++libcheck_la_LIBADD = libchecki.la libcheckl.la
+diff --git a/Cholesky/Makefile.am b/Cholesky/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Cholesky/Makefile.am
+@@ -0,0 +1,41 @@
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(COLAMD_CFLAGS) $(AMD_CFLAGS) $(SUITESPARSECONFIG_CFLAGS)
++
++EXTRA_DIST = \
++	License.txt \
++	lesser.txt
++
++CHOLESKYSRC = \
++	cholmod_amd.c \
++	cholmod_analyze.c \
++	cholmod_colamd.c \
++	cholmod_etree.c \
++	cholmod_factorize.c \
++	cholmod_postorder.c \
++	cholmod_rcond.c \
++	cholmod_resymbol.c \
++	cholmod_rowcolcounts.c \
++	cholmod_rowfac.c \
++	cholmod_solve.c \
++	cholmod_spsolve.c
++
++noinst_HEADERS = \
++	t_cholmod_lsolve.c \
++	t_cholmod_ltsolve.c \
++	t_cholmod_rowfac.c \
++	t_cholmod_solve.c
++
++noinst_LTLIBRARIES = \
++	libcholeskyi.la \
++	libcholeskyl.la \
++	libcholesky.la
++
++libcholeskyi_la_SOURCES = $(CHOLESKYSRC)
++libcholeskyi_la_LIBADD = $(COLAMD_LIBS) $(AMD_LIBS) -lm
++libcholeskyi_la_CPPFLAGS = $(AM_CPPFLAGS)
++
++libcholeskyl_la_SOURCES = $(CHOLESKYSRC)
++libcholeskyl_la_LIBADD = $(COLAMD_LIBS) $(AMD_LIBS) -lm
++libcholeskyl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
++
++libcholesky_la_SOURCES =
++libcholesky_la_LIBADD = libcholeskyi.la libcholeskyl.la
+diff --git a/Core/Makefile.am b/Core/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Core/Makefile.am
+@@ -0,0 +1,44 @@
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS)
++
++EXTRA_DIST = \
++	License.txt \
++	lesser.txt
++
++CORESRC = \
++	cholmod_aat.c \
++	cholmod_add.c \
++	cholmod_band.c \
++	cholmod_change_factor.c \
++	cholmod_common.c \
++	cholmod_complex.c \
++	cholmod_copy.c \
++	cholmod_dense.c \
++	cholmod_error.c \
++	cholmod_factor.c \
++	cholmod_memory.c \
++	cholmod_sparse.c \
++	cholmod_transpose.c \
++	cholmod_triplet.c \
++	cholmod_version.c
++
++noinst_HEADERS = \
++	t_cholmod_change_factor.c \
++	t_cholmod_dense.c \
++	t_cholmod_transpose.c \
++	t_cholmod_triplet.c
++
++noinst_LTLIBRARIES = \
++	libcorei.la \
++	libcorel.la \
++	libcore.la
++
++libcorei_la_SOURCES = $(CORESRC)
++libcorei_la_LIBADD = -lm
++libcorei_la_CPPFLAGS = $(AM_CPPFLAGS)
++
++libcorel_la_SOURCES = $(CORESRC)
++libcorel_la_LIBADD = -lm
++libcorel_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
++
++libcore_la_SOURCES =
++libcore_la_LIBADD = libcorei.la libcorel.la
+diff --git a/Demo/Makefile.am b/Demo/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Demo/Makefile.am
+@@ -0,0 +1,60 @@
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS)
++
++EXTRA_DIST = \
++	License.txt \
++	gpl.txt
++
++dist_noinst_HEADERS = \
++	cholmod_demo.h
++
++dist_noinst_DATA = \
++	Matrix/bcsstk01.tri \
++	Matrix/lp_afiro.tri \
++	Matrix/can___24.mtx \
++	Matrix/c.tri
++
++noinst_PROGRAMS = \
++	reade \
++	readhb \
++	readhb2
++
++reade_SOURCES = reade.f
++readhb_SOURCES = readhb.f
++readhb2_SOURCES = readhb2.f
++
++if MOD_CHOLESKY
++if MOD_CHECK
++if MOD_MATRIXOPS
++
++check_PROGRAMS = \
++	cholmod_demo \
++	cholmod_l_demo \
++	cholmod_simple
++
++cholmod_demo_SOURCES = cholmod_demo.c
++cholmod_demo_LDADD = $(top_builddir)/libcholmod.la $(SUITESPARSECONFIG_LIBS)
++
++cholmod_l_demo_SOURCES = cholmod_l_demo.c
++cholmod_l_demo_LDADD = $(top_builddir)/libcholmod.la $(SUITESPARSECONFIG_LIBS)
++
++cholmod_simple_SOURCES = cholmod_simple.c
++cholmod_simple_LDADD = $(top_builddir)/libcholmod.la
++
++check-local: $(check_PROGRAMS) $(dist_noinst_DATA)
++	./cholmod_demo < $(srcdir)/Matrix/bcsstk01.tri
++	./cholmod_l_demo < $(srcdir)/Matrix/bcsstk01.tri
++	./cholmod_demo < $(srcdir)/Matrix/lp_afiro.tri
++	./cholmod_l_demo < $(srcdir)/Matrix/lp_afiro.tri
++	./cholmod_demo < $(srcdir)/Matrix/can___24.mtx
++	./cholmod_l_demo < $(srcdir)/Matrix/can___24.mtx
++	./cholmod_demo < $(srcdir)/Matrix/c.tri
++	./cholmod_l_demo < $(srcdir)/Matrix/c.tri
++	./cholmod_simple < $(srcdir)/Matrix/c.tri
++	./cholmod_simple < $(srcdir)/Matrix/can___24.mtx
++	./cholmod_simple < $(srcdir)/Matrix/bcsstk01.tri
++
++endif
++endif
++endif
++
++CLEANFILES = timelog.m
+diff --git a/Doc/Makefile.am b/Doc/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Doc/Makefile.am
+@@ -0,0 +1,436 @@
++EXTRA_DIST = \
++	ChangeLog
++
++dist_noinst_DATA = \
++	UserGuide.bib \
++	UserGuide.tex \
++	header.tex \
++	footer.tex \
++	mheader.tex \
++	mfooter.tex \
++	mfile.awk \
++	rule.awk
++
++dist_pdf_DATA = \
++	UserGuide.pdf
++
++dist_noinst_SCRIPTS = \
++	getmproto \
++	getproto
++
++# ./getmproto file.m > _file_m.tex
++define getmproto =
++( \
++cat $(srcdir)/mheader.tex; \
++expand -8 $< | awk -f $(srcdir)/mfile.awk; \
++cat $(srcdir)/mfooter.tex; \
++) > $@
++endef
++
++# ./getproto 'proto' header.h > _file.tex
++define getproto =
++( \
++echo -n $(PATTERN); \
++cat $(srcdir)/rule.awk; \
++) > $(basename $@).awk
++( \
++cat $(srcdir)/header.tex; \
++expand -8 $< | awk -f $(basename $@).awk; \
++cat $(srcdir)/footer.tex; \
++) > $@
++$(RM) $(basename $@).awk
++endef
++
++PROTO_M = \
++	_analyze_m.tex \
++	_bisect_m.tex \
++	_chol2_m.tex \
++	_cholmod2_m.tex \
++	_cholmod_demo_m.tex \
++	_cholmod_make_m.tex \
++	_etree2_m.tex \
++	_graph_demo_m.tex \
++	_lchol_m.tex \
++	_ldl_normest_m.tex \
++	_ldlchol_m.tex \
++	_ldlsolve_m.tex \
++	_ldlsplit_m.tex \
++	_ldlupdate_m.tex \
++	_metis_m.tex \
++	_mread_m.tex \
++	_mwrite_m.tex \
++	_nesdis_m.tex \
++	_resymbol_m.tex \
++	_sdmult_m.tex \
++	_sparse2_m.tex \
++	_spsym_m.tex \
++	_symbfact2_m.tex
++
++$(PROTO_M): mheader.tex mfile.awk mfooter.tex
++_%_m.tex: $(top_srcdir)/MATLAB/%.m
++	$(getmproto)
++
++PROTO_SIMPLE = \
++	_simple.tex
++
++_simple.tex: PATTERN = '/include/, /^}/'
++
++$(PROTO_SIMPLE): $(top_srcdir)/Demo/cholmod_simple.c header.tex rule.awk footer.tex
++	$(getproto)
++
++PROTO_CORE = \
++	_common.tex \
++	_start.tex \
++	_finish.tex \
++	_defaults.tex \
++	_maxrank.tex \
++	_allocate_work.tex \
++	_free_work.tex \
++	_clear_flag.tex \
++	_error.tex \
++	_dbound.tex \
++	_hypot.tex \
++	_divcomplex.tex \
++	_sparse.tex \
++	_allocate_sparse.tex \
++	_free_sparse.tex \
++	_reallocate_sparse.tex \
++	_nnz.tex \
++	_speye.tex \
++	_spzeros.tex \
++	_transpose.tex \
++	_transpose_unsym.tex \
++	_transpose_sym.tex \
++	_ptranspose.tex \
++	_sort.tex \
++	_band.tex \
++	_band_inplace.tex \
++	_aat.tex \
++	_copy_sparse.tex \
++	_copy.tex \
++	_add.tex \
++	_sparse_xtype.tex \
++	_factor.tex \
++	_allocate_factor.tex \
++	_free_factor.tex \
++	_reallocate_factor.tex \
++	_change_factor.tex \
++	_pack_factor.tex \
++	_reallocate_column.tex \
++	_factor_to_sparse.tex \
++	_copy_factor.tex \
++	_factor_xtype.tex \
++	_dense.tex \
++	_allocate_dense.tex \
++	_ensure_dense.tex \
++	_zeros.tex \
++	_ones.tex \
++	_eye.tex \
++	_free_dense.tex \
++	_sparse_to_dense.tex \
++	_dense_to_sparse.tex \
++	_copy_dense.tex \
++	_copy_dense2.tex \
++	_dense_xtype.tex \
++	_triplet.tex \
++	_allocate_triplet.tex \
++	_free_triplet.tex \
++	_reallocate_triplet.tex \
++	_sparse_to_triplet.tex \
++	_triplet_to_sparse.tex \
++	_copy_triplet.tex \
++	_triplet_xtype.tex \
++	_malloc.tex \
++	_calloc.tex \
++	_free.tex \
++	_realloc.tex \
++	_realloc_multiple.tex \
++	_version.tex \
++	_defn.tex
++
++_common.tex: PATTERN = '/typedef struct cholmod_common/, /^}/'
++_start.tex: PATTERN = '/int cholmod_start/, /\*\) ;/'
++_finish.tex: PATTERN = '/int cholmod_finish/, /\*\) ;/'
++_defaults.tex: PATTERN = '/int cholmod_defaults/, /\*\) ;/'
++_maxrank.tex: PATTERN = '/size_t cholmod_maxrank/, /\*\) ;/'
++_allocate_work.tex: PATTERN = '/int cholmod_allocate_work/, /\*\) ;/'
++_free_work.tex: PATTERN = '/int cholmod_free_work/, /\*\) ;/'
++_clear_flag.tex: PATTERN = '/long cholmod_clear_flag/, /\*\) ;/'
++_error.tex: PATTERN = '/int cholmod_error/, /\*\) ;/'
++_dbound.tex: PATTERN = '/double cholmod_dbound/, /\*\) ;/'
++_hypot.tex: PATTERN = '/double cholmod_hypot/, /double\) ;/'
++_divcomplex.tex: PATTERN = '/int cholmod_divcomplex/, /\*\) ;/'
++_sparse.tex: PATTERN = '/typedef struct cholmod_sparse/, /^}/'
++_allocate_sparse.tex: PATTERN = '/cholmod_sparse \*cholmod_allocate_sparse/, /\*\) ;/'
++_free_sparse.tex: PATTERN = '/int cholmod_free_sparse/, /\*\) ;/'
++_reallocate_sparse.tex: PATTERN = '/int cholmod_reallocate_sparse/, /\*\) ;/'
++_nnz.tex: PATTERN = '/long cholmod_nnz/, /\*\) ;/'
++_speye.tex: PATTERN = '/cholmod_sparse \*cholmod_speye/, /\*\) ;/'
++_spzeros.tex: PATTERN = '/cholmod_sparse \*cholmod_spzeros/, /\*\) ;/'
++_transpose.tex: PATTERN = '/cholmod_sparse \*cholmod_transpose/, /\*\) ;/'
++_transpose_unsym.tex: PATTERN = '/int cholmod_transpose_unsym/, /\*\) ;/'
++_transpose_sym.tex: PATTERN = '/int cholmod_transpose_sym/, /\*\) ;/'
++_ptranspose.tex: PATTERN = '/cholmod_sparse \*cholmod_ptranspose/, /\*\) ;/'
++_sort.tex: PATTERN = '/int cholmod_sort/, /\*\) ;/'
++_band.tex: PATTERN = '/cholmod_sparse \*cholmod_band/, /\*\) ;/'
++_band_inplace.tex: PATTERN = '/int cholmod_band_inplace/, /\*\) ;/'
++_aat.tex: PATTERN = '/cholmod_sparse \*cholmod_aat/, /\*\) ;/'
++_copy_sparse.tex: PATTERN = '/cholmod_sparse \*cholmod_copy_sparse/, /\*\) ;/'
++_copy.tex: PATTERN = '/cholmod_sparse \*cholmod_copy /, /\*\) ;/'
++_add.tex: PATTERN = '/cholmod_sparse \*cholmod_add/, /\*\) ;/'
++_sparse_xtype.tex: PATTERN = '/int cholmod_sparse_xtype/, /\*\) ;/'
++_factor.tex: PATTERN = '/typedef struct cholmod_factor/, /^}/'
++_allocate_factor.tex: PATTERN = '/cholmod_factor \*cholmod_allocate_factor/, /\*\) ;/'
++_free_factor.tex: PATTERN = '/int cholmod_free_factor/, /\*\) ;/'
++_reallocate_factor.tex: PATTERN = '/int cholmod_reallocate_factor/, /\*\) ;/'
++_change_factor.tex: PATTERN = '/int cholmod_change_factor/, /\*\) ;/'
++_pack_factor.tex: PATTERN = '/int cholmod_pack_factor/, /\*\) ;/'
++_reallocate_column.tex: PATTERN = '/int cholmod_reallocate_column/, /\*\) ;/'
++_factor_to_sparse.tex: PATTERN = '/cholmod_sparse \*cholmod_factor_to_sparse/, /\*\) ;/'
++_copy_factor.tex: PATTERN = '/cholmod_factor \*cholmod_copy_factor/, /\*\) ;/'
++_factor_xtype.tex: PATTERN = '/int cholmod_factor_xtype/, /\*\) ;/'
++_dense.tex: PATTERN = '/typedef struct cholmod_dense/, /^}/'
++_allocate_dense.tex: PATTERN = '/cholmod_dense \*cholmod_allocate_dense/, /\*\) ;/'
++_ensure_dense.tex: PATTERN = '/cholmod_dense \*cholmod_ensure_dense/, /\*\) ;/'
++_zeros.tex: PATTERN = '/cholmod_dense \*cholmod_zeros/, /\*\) ;/'
++_ones.tex: PATTERN = '/cholmod_dense \*cholmod_ones/, /\*\) ;/'
++_eye.tex: PATTERN = '/cholmod_dense \*cholmod_eye/, /\*\) ;/'
++_free_dense.tex: PATTERN = '/int cholmod_free_dense/, /\*\) ;/'
++_sparse_to_dense.tex: PATTERN = '/cholmod_dense \*cholmod_sparse_to_dense/, /\*\) ;/'
++_dense_to_sparse.tex: PATTERN = '/cholmod_sparse \*cholmod_dense_to_sparse/, /\*\) ;/'
++_copy_dense.tex: PATTERN = '/cholmod_dense \*cholmod_copy_dense/, /\*\) ;/'
++_copy_dense2.tex: PATTERN = '/int cholmod_copy_dense2/, /\*\) ;/'
++_dense_xtype.tex: PATTERN = '/int cholmod_dense_xtype/, /\*\) ;/'
++_triplet.tex: PATTERN = '/typedef struct cholmod_triplet/, /^}/'
++_allocate_triplet.tex: PATTERN = '/cholmod_triplet \*cholmod_allocate_triplet/, /\*\) ;/'
++_free_triplet.tex: PATTERN = '/int cholmod_free_triplet/, /\*\) ;/'
++_reallocate_triplet.tex: PATTERN = '/int cholmod_reallocate_triplet/, /\*\) ;/'
++_sparse_to_triplet.tex: PATTERN = '/cholmod_triplet \*cholmod_sparse_to_triplet/, /\*\) ;/'
++_triplet_to_sparse.tex: PATTERN = '/cholmod_sparse \*cholmod_triplet_to_sparse/, /\*\) ;/'
++_copy_triplet.tex: PATTERN = '/cholmod_triplet \*cholmod_copy_triplet/, /\*\) ;/'
++_triplet_xtype.tex: PATTERN = '/int cholmod_triplet_xtype/, /\*\) ;/'
++_malloc.tex: PATTERN = '/void \*cholmod_malloc/, /\*\) ;/'
++_calloc.tex: PATTERN = '/void \*cholmod_calloc/, /\*\) ;/'
++_free.tex: PATTERN = '/void \*cholmod_free/, /\*\) ;/'
++_realloc.tex: PATTERN = '/void \*cholmod_realloc/, /\*\) ;/'
++_realloc_multiple.tex: PATTERN = '/int cholmod_realloc_multiple/, /\*\) ;/'
++_version.tex: PATTERN = '/int cholmod_version/, /l_version/'
++_defn.tex: PATTERN = '/itype defines the/, /define CHOLMOD_SUPERNODAL/'
++
++$(PROTO_CORE): $(top_srcdir)/Include/cholmod_core.h header.tex rule.awk footer.tex
++	$(getproto)
++
++PROTO_CHECK = \
++	_check_common.tex \
++	_print_common.tex \
++	_check_sparse.tex \
++	_print_sparse.tex \
++	_check_dense.tex \
++	_print_dense.tex \
++	_check_factor.tex \
++	_print_factor.tex \
++	_check_triplet.tex \
++	_print_triplet.tex \
++	_check_subset.tex \
++	_print_subset.tex \
++	_check_perm.tex \
++	_print_perm.tex \
++	_check_parent.tex \
++	_print_parent.tex \
++	_read_triplet.tex \
++	_read_sparse.tex \
++	_read_dense.tex \
++	_read_matrix.tex \
++	_write_sparse.tex \
++	_write_dense.tex
++
++_check_common.tex: PATTERN = '/int cholmod_check_common/, /\*\) ;/'
++_print_common.tex: PATTERN = '/int cholmod_print_common/, /\*\) ;/'
++_check_sparse.tex: PATTERN = '/int cholmod_check_sparse/, /\*\) ;/'
++_print_sparse.tex: PATTERN = '/int cholmod_print_sparse/, /\*\) ;/'
++_check_dense.tex: PATTERN = '/int cholmod_check_dense/, /\*\) ;/'
++_print_dense.tex: PATTERN = '/int cholmod_print_dense/, /\*\) ;/'
++_check_factor.tex: PATTERN = '/int cholmod_check_factor/, /\*\) ;/'
++_print_factor.tex: PATTERN = '/int cholmod_print_factor/, /\*\) ;/'
++_check_triplet.tex: PATTERN = '/int cholmod_check_triplet/, /\*\) ;/'
++_print_triplet.tex: PATTERN = '/int cholmod_print_triplet/, /\*\) ;/'
++_check_subset.tex: PATTERN = '/int cholmod_check_subset/, /\*\) ;/'
++_print_subset.tex: PATTERN = '/int cholmod_print_subset/, /\*\) ;/'
++_check_perm.tex: PATTERN = '/int cholmod_check_perm/, /\*\) ;/'
++_print_perm.tex: PATTERN = '/int cholmod_print_perm/, /\*\) ;/'
++_check_parent.tex: PATTERN = '/int cholmod_check_parent/, /\*\) ;/'
++_print_parent.tex: PATTERN = '/int cholmod_print_parent/, /\*\) ;/'
++_read_triplet.tex: PATTERN = '/cholmod_triplet \*cholmod_read_triplet/, /\*\) ;/'
++_read_sparse.tex: PATTERN = '/cholmod_sparse \*cholmod_read_sparse/, /\*\) ;/'
++_read_dense.tex: PATTERN = '/cholmod_dense \*cholmod_read_dense/, /\*\) ;/'
++_read_matrix.tex: PATTERN = '/void \*cholmod_read_matrix/, /\*\) ;/'
++_write_sparse.tex: PATTERN = '/int cholmod_write_sparse/, /\*\) ;/'
++_write_dense.tex: PATTERN = '/int cholmod_write_dense/, /\*\) ;/'
++
++$(PROTO_CHECK): $(top_srcdir)/Include/cholmod_check.h header.tex rule.awk footer.tex
++	$(getproto)
++
++PROTO_CHOLESKY = \
++	_analyze.tex \
++	_analyze_p.tex \
++	_factorize.tex \
++	_factorize_p.tex \
++	_solve.tex \
++	_solve2.tex \
++	_spsolve.tex \
++	_etree.tex \
++	_rowcolcounts.tex \
++	_analyze_ordering.tex \
++	_amd.tex \
++	_colamd.tex \
++	_rowfac.tex \
++	_rowfac_mask.tex \
++	_row_subtree.tex \
++	_row_lsubtree.tex \
++	_lsolve_pattern.tex \
++	_resymbol.tex \
++	_resymbol_noperm.tex \
++	_rcond.tex \
++	_postorder.tex
++
++_analyze.tex: PATTERN = '/cholmod_factor \*cholmod_analyze /, /\*\) ;/'
++_analyze_p.tex: PATTERN = '/cholmod_factor \*cholmod_analyze_p/, /\*\) ;/'
++_factorize.tex: PATTERN = '/int cholmod_factorize /, /\*\) ;/'
++_factorize_p.tex: PATTERN = '/int cholmod_factorize_p/, /\*\) ;/'
++_solve.tex: PATTERN = '/cholmod_dense \*cholmod_solve/, /\*\) ;/'
++_solve2.tex: PATTERN = '/int cholmod_solve2/, /\*\) ;/'
++_spsolve.tex: PATTERN = '/cholmod_sparse \*cholmod_spsolve/, /\*\) ;/'
++_etree.tex: PATTERN = '/int cholmod_etree/, /\*\) ;/'
++_rowcolcounts.tex: PATTERN = '/int cholmod_rowcolcounts/, /\*\) ;/'
++_analyze_ordering.tex: PATTERN = '/int cholmod_analyze_ordering/, /\*\) ;/'
++_amd.tex: PATTERN = '/int cholmod_amd/, /\*\) ;/'
++_colamd.tex: PATTERN = '/int cholmod_colamd/, /\*\) ;/'
++_rowfac.tex: PATTERN = '/int cholmod_rowfac/, /\*\) ;/'
++_rowfac_mask.tex: PATTERN = '/int cholmod_rowfac_mask/, /\*\) ;/'
++_row_subtree.tex: PATTERN = '/int cholmod_row_subtree/, /\*\) ;/'
++_row_lsubtree.tex: PATTERN = '/int cholmod_row_lsubtree/, /\*\) ;/'
++_lsolve_pattern.tex: PATTERN = '/int cholmod_lsolve_pattern/, /\*\) ;/'
++_resymbol.tex: PATTERN = '/int cholmod_resymbol /, /\*\) ;/'
++_resymbol_noperm.tex: PATTERN = '/int cholmod_resymbol_noperm/, /\*\) ;/'
++_rcond.tex: PATTERN = '/double cholmod_rcond/, /\*\) ;/'
++_postorder.tex: PATTERN = '/long cholmod_postorder/, /\*\) ;/'
++
++$(PROTO_CHOLESKY): $(top_srcdir)/Include/cholmod_cholesky.h header.tex rule.awk footer.tex
++	$(getproto)
++
++PROTO_MODIFY = \
++	_updown.tex \
++	_updown_solve.tex \
++	_updown_mark.tex \
++	_updown_mask.tex \
++	_rowadd.tex \
++	_rowadd_solve.tex \
++	_rowadd_mark.tex \
++	_rowdel.tex \
++	_rowdel_solve.tex \
++	_rowdel_mark.tex
++
++_updown.tex: PATTERN = '/int cholmod_updown /, /\*\) ;/'
++_updown_solve.tex: PATTERN = '/int cholmod_updown_solve/, /\*\) ;/'
++_updown_mark.tex: PATTERN = '/int cholmod_updown_mark/, /\*\) ;/'
++_updown_mask.tex: PATTERN = '/int cholmod_updown_mask/, /\*\) ;/'
++_rowadd.tex: PATTERN = '/int cholmod_rowadd /, /\*\) ;/'
++_rowadd_solve.tex: PATTERN = '/int cholmod_rowadd_solve/, /\*\) ;/'
++_rowadd_mark.tex: PATTERN = '/int cholmod_rowadd_mark/, /\*\) ;/'
++_rowdel.tex: PATTERN = '/int cholmod_rowdel /, /\*\) ;/'
++_rowdel_solve.tex: PATTERN = '/int cholmod_rowdel_solve/, /\*\) ;/'
++_rowdel_mark.tex: PATTERN = '/int cholmod_rowdel_mark/, /\*\) ;/'
++
++$(PROTO_MODIFY): $(top_srcdir)/Include/cholmod_modify.h header.tex rule.awk footer.tex
++	$(getproto)
++
++PROTO_MATRIXOPS = \
++	_drop.tex \
++	_norm_dense.tex \
++	_norm_sparse.tex \
++	_horzcat.tex \
++	_scale.tex \
++	_sdmult.tex \
++	_ssmult.tex \
++	_submatrix.tex \
++	_vertcat.tex \
++	_symmetry.tex
++
++_drop.tex: PATTERN = '/int cholmod_drop/, /\*\) ;/'
++_norm_dense.tex: PATTERN = '/double cholmod_norm_dense/, /\*\) ;/'
++_norm_sparse.tex: PATTERN = '/double cholmod_norm_sparse/, /\*\) ;/'
++_horzcat.tex: PATTERN = '/cholmod_sparse \*cholmod_horzcat/, /\*\) ;/'
++_scale.tex: PATTERN = '/define CHOLMOD_SCALAR/, /\*\) ;/'
++_sdmult.tex: PATTERN = '/int cholmod_sdmult/, /\*\) ;/'
++_ssmult.tex: PATTERN = '/cholmod_sparse \*cholmod_ssmult/, /\*\) ;/'
++_submatrix.tex: PATTERN = '/cholmod_sparse \*cholmod_submatrix/, /\*\) ;/'
++_vertcat.tex: PATTERN = '/cholmod_sparse \*cholmod_vertcat/, /\*\) ;/'
++_symmetry.tex: PATTERN = '/int cholmod_symmetry/, /\*\) ;/'
++
++$(PROTO_MATRIXOPS): $(top_srcdir)/Include/cholmod_matrixops.h header.tex rule.awk footer.tex
++	$(getproto)
++
++PROTO_SUPERNODAL = \
++	_super_symbolic.tex \
++	_super_numeric.tex \
++	_super_lsolve.tex \
++	_super_ltsolve.tex
++
++_super_symbolic.tex: PATTERN = '/int cholmod_super_symbolic/, /\*\) ;/'
++_super_numeric.tex: PATTERN = '/int cholmod_super_numeric/, /\*\) ;/'
++_super_lsolve.tex: PATTERN = '/int cholmod_super_lsolve/, /\*\) ;/'
++_super_ltsolve.tex: PATTERN = '/int cholmod_super_ltsolve/, /\*\) ;/'
++
++$(PROTO_SUPERNODAL): $(top_srcdir)/Include/cholmod_supernodal.h header.tex rule.awk footer.tex
++	$(getproto)
++
++PROTO_PARTITION = \
++	_nested_dissection.tex \
++	_metis.tex \
++	_ccolamd.tex \
++	_camd.tex \
++	_csymamd.tex \
++	_bisect.tex \
++	_metis_bisector.tex \
++	_collapse_septree.tex
++
++_nested_dissection.tex: PATTERN = '/long cholmod_nested_dissection/, /\*\) ;/'
++_metis.tex: PATTERN = '/int cholmod_metis/, /\*\) ;/'
++_ccolamd.tex: PATTERN = '/int cholmod_ccolamd/, /\*\) ;/'
++_camd.tex: PATTERN = '/int cholmod_camd/, /\*\) ;/'
++_csymamd.tex: PATTERN = '/int cholmod_csymamd/, /\*\) ;/'
++_bisect.tex: PATTERN = '/long cholmod_bisect/, /\*\) ;/'
++_metis_bisector.tex: PATTERN = '/long cholmod_metis_bisector/, /\*\) ;/'
++_collapse_septree.tex: PATTERN = '/long cholmod_collapse_septree/, /\*\) ;/'
++
++$(PROTO_PARTITION): $(top_srcdir)/Include/cholmod_partition.h header.tex rule.awk footer.tex
++	$(getproto)
++
++PROTO = \
++	$(PROTO_M) \
++	$(PROTO_SIMPLE) \
++	$(PROTO_CORE) \
++	$(PROTO_CHECK) \
++	$(PROTO_CHOLESKY) \
++	$(PROTO_MODIFY) \
++	$(PROTO_MATRIXOPS) \
++	$(PROTO_SUPERNODAL) \
++	$(PROTO_PARTITION)
++
++UserGuide.pdf UserGuide.aux: $(PROTO)
++.INTERMEDIATE: UserGuide.aux $(PROTO)
++
++TEX = TEXINPUTS="$(srcdir):" pdflatex -interaction nonstopmode -file-line-error
++BIB = BIBINPUTS="$(srcdir):" bibtex
++%.pdf: %.tex %.bbl
++	$(TEX) $*
++	while grep -q "Rerun to get cross-references right" $*.log; do \
++		$(TEX) $*; \
++	done
++%.bbl: %.aux %.bib
++	$(BIB) $*
++%.aux: %.tex
++	$(TEX) $*
++
++CLEANFILES = _*.awk _*.tex *.dvi *.aux *.log *.lof *.lot *.toc *.bak *.bbl *.blg
++MAINTAINERCLEANFILES = $(dist_pdf_DATA)
+diff --git a/Include/Makefile.am b/Include/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Include/Makefile.am
+@@ -0,0 +1,42 @@
++EXTRA_DIST = \
++	License.txt \
++	README.txt
++
++# Automatically generated headers
++nodist_pkginclude_HEADERS = \
++	cholmod_config.h
++
++pkginclude_HEADERS = \
++	cholmod.h \
++	cholmod_blas.h \
++	cholmod_core.h \
++	cholmod_io64.h
++
++noinst_HEADERS = \
++	cholmod_complexity.h \
++	cholmod_internal.h \
++	cholmod_template.h
++
++if MOD_CHECK
++pkginclude_HEADERS += cholmod_check.h
++endif
++
++if MOD_CHOLESKY
++pkginclude_HEADERS += cholmod_cholesky.h
++endif
++
++if MOD_PARTITION
++pkginclude_HEADERS += cholmod_camd.h cholmod_partition.h
++endif
++
++if MOD_MATRIXOPS
++pkginclude_HEADERS += cholmod_matrixops.h
++endif
++
++if MOD_MODIFY
++pkginclude_HEADERS += cholmod_modify.h
++endif
++
++if MOD_SUPERNODAL
++pkginclude_HEADERS += cholmod_supernodal.h
++endif
+diff --git a/Include/cholmod_config.h b/Include/cholmod_config.h.in
+rename from Include/cholmod_config.h
+rename to Include/cholmod_config.h.in
+--- a/Include/cholmod_config.h
++++ b/Include/cholmod_config.h.in
+@@ -54,17 +54,31 @@
+ /* Use the compiler flag, or uncomment the definition(s), if you want to use
+  * one or more non-default installation options: */
+ 
+-/*
+-#define NCHECK
+-#define NCHOLESKY
+-#define NCAMD
+-#define NPARTITION
++/* Define to disable the Check module */
++#undef NCHECK
+ 
+-#define NGPL  
+-#define NMATRIXOPS
+-#define NMODIFY
+-#define NSUPERNODAL
++/* Define to disable the Cholesky module */
++#undef NCHOLESKY
++
++/* Define to disable the Partition module */
++#undef NCAMD
++
++/* Define to disable metis support in the Partition module */
++#undef NPARTITION
+ 
++/* Define to disable GPL-licensed modules */
++#undef NGPL
++
++/* Define to disable the MatrixOps module */
++#undef NMATRIXOPS
++
++/* Define to disable the Modify module */
++#undef NMODIFY
++
++/* Define to disable the Supernodal module */
++#undef NSUPERNODAL
++
++/*
+ #define NPRINT
+ 
+ #define LONGBLAS long
+diff --git a/MATLAB/Makefile.am b/MATLAB/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/MATLAB/Makefile.am
+@@ -0,0 +1,25 @@
++# Needed by Doc/Makefile.am
++EXTRA_DIST = \
++	analyze.m \
++	bisect.m \
++	chol2.m \
++	cholmod2.m \
++	cholmod_demo.m \
++	cholmod_make.m \
++	etree2.m \
++	graph_demo.m \
++	lchol.m \
++	ldl_normest.m \
++	ldlchol.m \
++	ldlsolve.m \
++	ldlsplit.m \
++	ldlupdate.m \
++	metis.m \
++	mread.m \
++	mwrite.m \
++	nesdis.m \
++	resymbol.m \
++	sdmult.m \
++	sparse2.m \
++	spsym.m \
++	symbfact2.m
+diff --git a/Makefile.am b/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Makefile.am
+@@ -0,0 +1,43 @@
++SUBDIRS = Include Core
++EXTRA_DIST = README.txt
++
++pkgconfigdir = $(libdir)/pkgconfig
++pkgconfig_DATA = cholmod.pc
++
++lib_LTLIBRARIES = libcholmod.la
++
++libcholmod_la_SOURCES =
++libcholmod_la_LIBADD = $(top_builddir)/Core/libcore.la
++libcholmod_la_LDFLAGS = -no-undefined -version-number 2:1:2
++
++if MOD_CHECK
++SUBDIRS += Check
++libcholmod_la_LIBADD += $(top_builddir)/Check/libcheck.la
++endif
++
++if MOD_CHOLESKY
++SUBDIRS += Cholesky
++libcholmod_la_LIBADD += $(top_builddir)/Cholesky/libcholesky.la
++endif
++
++if MOD_PARTITION
++SUBDIRS += Partition
++libcholmod_la_LIBADD += $(top_builddir)/Partition/libpartition.la
++endif
++
++if MOD_MATRIXOPS
++SUBDIRS += MatrixOps
++libcholmod_la_LIBADD += $(top_builddir)/MatrixOps/libmatrixops.la
++endif
++
++if MOD_MODIFY
++SUBDIRS += Modify
++libcholmod_la_LIBADD += $(top_builddir)/Modify/libmodify.la
++endif
++
++if MOD_SUPERNODAL
++SUBDIRS += Supernodal
++libcholmod_la_LIBADD += $(top_builddir)/Supernodal/libsupernodal.la
++endif
++
++SUBDIRS += MATLAB Demo Doc
+diff --git a/MatrixOps/Makefile.am b/MatrixOps/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/MatrixOps/Makefile.am
+@@ -0,0 +1,35 @@
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS)
++
++EXTRA_DIST = \
++	License.txt \
++	gpl.txt
++
++MATRIXOPSSRC = \
++	cholmod_drop.c \
++	cholmod_horzcat.c \
++	cholmod_norm.c \
++	cholmod_scale.c \
++	cholmod_sdmult.c \
++	cholmod_ssmult.c \
++	cholmod_submatrix.c \
++	cholmod_symmetry.c \
++	cholmod_vertcat.c
++
++noinst_HEADERS = \
++	t_cholmod_sdmult.c
++
++noinst_LTLIBRARIES = \
++	libmatrixopsi.la \
++	libmatrixopsl.la \
++	libmatrixops.la
++
++libmatrixopsi_la_SOURCES = $(MATRIXOPSSRC)
++libmatrixopsi_la_LIBADD = -lm
++libmatrixopsi_la_CPPFLAGS = $(AM_CPPFLAGS)
++
++libmatrixopsl_la_SOURCES = $(MATRIXOPSSRC)
++libmatrixopsl_la_LIBADD = -lm
++libmatrixopsl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
++
++libmatrixops_la_SOURCES =
++libmatrixops_la_LIBADD = libmatrixopsi.la libmatrixopsl.la
+diff --git a/Modify/Makefile.am b/Modify/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Modify/Makefile.am
+@@ -0,0 +1,30 @@
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS)
++
++EXTRA_DIST = \
++	License.txt \
++	gpl.txt
++
++MODIFYSRC = \
++	cholmod_rowadd.c \
++	cholmod_rowdel.c \
++	cholmod_updown.c
++
++noinst_HEADERS = \
++	t_cholmod_updown.c \
++	t_cholmod_updown_numkr.c
++
++noinst_LTLIBRARIES = \
++	libmodifyi.la \
++	libmodifyl.la \
++	libmodify.la
++
++libmodifyi_la_SOURCES = $(MODIFYSRC)
++libmodifyi_la_LIBADD = -lm
++libmodifyi_la_CPPFLAGS = $(AM_CPPFLAGS)
++
++libmodifyl_la_SOURCES = $(MODIFYSRC)
++libmodifyl_la_LIBADD = -lm
++libmodifyl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
++
++libmodify_la_SOURCES =
++libmodify_la_LIBADD = libmodifyi.la libmodifyl.la
+diff --git a/Partition/Makefile.am b/Partition/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Partition/Makefile.am
+@@ -0,0 +1,28 @@
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(METIS_CFLAGS) $(CCOLAMD_CFLAGS) $(CAMD_CFLAGS) $(SUITESPARSECONFIG_CFLAGS)
++
++EXTRA_DIST = \
++	License.txt \
++	lesser.txt
++
++PARTITIONSRC = \
++	cholmod_camd.c \
++	cholmod_ccolamd.c \
++	cholmod_csymamd.c \
++	cholmod_metis.c \
++	cholmod_nesdis.c
++
++noinst_LTLIBRARIES = \
++	libpartitioni.la \
++	libpartitionl.la \
++	libpartition.la
++
++libpartitioni_la_SOURCES = $(PARTITIONSRC)
++libpartitioni_la_LIBADD = $(METIS_LIBS) $(CCOLAMD_LIBS) $(CAMD_LIBS) -lm
++libpartitioni_la_CPPFLAGS = $(AM_CPPFLAGS)
++
++libpartitionl_la_SOURCES = $(PARTITIONSRC)
++libpartitionl_la_LIBADD = $(METIS_LIBS) $(CCOLAMD_LIBS) $(CAMD_LIBS) -lm
++libpartitionl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
++
++libpartition_la_SOURCES =
++libpartition_la_LIBADD = libpartitioni.la libpartitionl.la
+diff --git a/Partition/cholmod_camd.c b/Partition/cholmod_camd.c
+--- a/Partition/cholmod_camd.c
++++ b/Partition/cholmod_camd.c
+@@ -32,6 +32,7 @@
+  * Supports any xtype (pattern, real, complex, or zomplex)
+  */
+ 
++#include "cholmod_config.h"
+ #ifndef NCAMD
+ 
+ #include "cholmod_internal.h"
+diff --git a/Partition/cholmod_ccolamd.c b/Partition/cholmod_ccolamd.c
+--- a/Partition/cholmod_ccolamd.c
++++ b/Partition/cholmod_ccolamd.c
+@@ -22,6 +22,7 @@
+  * Supports any xtype (pattern, real, complex, or zomplex).
+  */
+ 
++#include "cholmod_config.h"
+ #ifndef NCAMD
+ 
+ #include "cholmod_internal.h"
+diff --git a/Partition/cholmod_csymamd.c b/Partition/cholmod_csymamd.c
+--- a/Partition/cholmod_csymamd.c
++++ b/Partition/cholmod_csymamd.c
+@@ -21,6 +21,7 @@
+  * Supports any xtype (pattern, real, complex, or zomplex).
+  */
+ 
++#include "cholmod_config.h"
+ #ifndef NCAMD
+ 
+ #include "cholmod_internal.h"
+diff --git a/Partition/cholmod_metis.c b/Partition/cholmod_metis.c
+--- a/Partition/cholmod_metis.c
++++ b/Partition/cholmod_metis.c
+@@ -43,6 +43,7 @@
+  * Supports any xtype (pattern, real, complex, or zomplex).
+  */
+ 
++#include "cholmod_config.h"
+ #ifndef NPARTITION
+ 
+ #include "cholmod_internal.h"
+diff --git a/Partition/cholmod_nesdis.c b/Partition/cholmod_nesdis.c
+--- a/Partition/cholmod_nesdis.c
++++ b/Partition/cholmod_nesdis.c
+@@ -38,6 +38,7 @@
+  * Supports any xtype (pattern, real, complex, or zomplex).
+  */
+ 
++#include "cholmod_config.h"
+ #ifndef NPARTITION
+ 
+ #include "cholmod_internal.h"
+diff --git a/Supernodal/Makefile.am b/Supernodal/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Supernodal/Makefile.am
+@@ -0,0 +1,39 @@
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS)
++
++EXTRA_DIST = \
++	License.txt \
++	gpl.txt
++
++SUPERNODALSRC = \
++	cholmod_super_numeric.c \
++	cholmod_super_solve.c \
++	cholmod_super_symbolic.c
++
++noinst_HEADERS = \
++	t_cholmod_gpu.c \
++	t_cholmod_super_numeric.c \
++	t_cholmod_super_solve.c
++
++noinst_LTLIBRARIES = \
++	libsupernodali.la \
++	libsupernodall.la \
++	libsupernodal.la
++
++libsupernodali_la_SOURCES = $(SUPERNODALSRC)
++libsupernodali_la_LIBADD = $(LAPACK_LIBS) $(BLAS_LIBS)
++libsupernodali_la_CPPFLAGS = $(AM_CPPFLAGS)
++
++libsupernodall_la_SOURCES = $(SUPERNODALSRC)
++libsupernodall_la_LIBADD = $(LAPACK_LIBS) $(BLAS_LIBS)
++libsupernodall_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
++
++if TIMING
++libsupernodali_la_LIBADD += $(SUITESPARSECONFIG_LIBS)
++libsupernodall_la_LIBADD += $(SUITESPARSECONFIG_LIBS)
++else
++libsupernodali_la_CPPFLAGS += -DNTIMER
++libsupernodall_la_CPPFLAGS += -DNTIMER
++endif
++
++libsupernodal_la_SOURCES =
++libsupernodal_la_LIBADD = libsupernodali.la libsupernodall.la
+diff --git a/ax_blas.m4 b/ax_blas.m4
+new file mode 100644
+--- /dev/null
++++ b/ax_blas.m4
+@@ -0,0 +1,238 @@
++# ===========================================================================
++#          http://www.gnu.org/software/autoconf-archive/ax_blas.html
++# ===========================================================================
++#
++# SYNOPSIS
++#
++#   AX_BLAS([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]])
++#
++# DESCRIPTION
++#
++#   This macro looks for a library that implements the BLAS linear-algebra
++#   interface (see http://www.netlib.org/blas/). On success, it sets the
++#   BLAS_LIBS output variable to hold the requisite library linkages.
++#
++#   To link with BLAS, you should link with:
++#
++#     $BLAS_LIBS $LIBS $FLIBS
++#
++#   in that order. FLIBS is the output variable of the
++#   AC_F77_LIBRARY_LDFLAGS macro (called if necessary by AX_BLAS), and is
++#   sometimes necessary in order to link with F77 libraries. Users will also
++#   need to use AC_F77_DUMMY_MAIN (see the autoconf manual), for the same
++#   reason.
++#
++#   Many libraries are searched for, from ATLAS to CXML to ESSL. The user
++#   may also use --with-blas=<lib> in order to use some specific BLAS
++#   library <lib>. In order to link successfully, however, be aware that you
++#   will probably need to use the same Fortran compiler (which can be set
++#   via the F77 env. var.) as was used to compile the BLAS library.
++#
++#   ACTION-IF-FOUND is a list of shell commands to run if a BLAS library is
++#   found, and ACTION-IF-NOT-FOUND is a list of commands to run it if it is
++#   not found. If ACTION-IF-FOUND is not specified, the default action will
++#   define HAVE_BLAS.
++#
++# LICENSE
++#
++#   Copyright (c) 2008 Steven G. Johnson <stevenj@alum.mit.edu>
++#
++#   This program is free software: you can redistribute it and/or modify it
++#   under the terms of the GNU General Public License as published by the
++#   Free Software Foundation, either version 3 of the License, or (at your
++#   option) any later version.
++#
++#   This program is distributed in the hope that it will be useful, but
++#   WITHOUT ANY WARRANTY; without even the implied warranty of
++#   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
++#   Public License for more details.
++#
++#   You should have received a copy of the GNU General Public License along
++#   with this program. If not, see <http://www.gnu.org/licenses/>.
++#
++#   As a special exception, the respective Autoconf Macro's copyright owner
++#   gives unlimited permission to copy, distribute and modify the configure
++#   scripts that are the output of Autoconf when processing the Macro. You
++#   need not follow the terms of the GNU General Public License when using
++#   or distributing such scripts, even though portions of the text of the
++#   Macro appear in them. The GNU General Public License (GPL) does govern
++#   all other use of the material that constitutes the Autoconf Macro.
++#
++#   This special exception to the GPL applies to versions of the Autoconf
++#   Macro released by the Autoconf Archive. When you make and distribute a
++#   modified version of the Autoconf Macro, you may extend this special
++#   exception to the GPL to apply to your modified version as well.
++
++#serial 14
++
++AU_ALIAS([ACX_BLAS], [AX_BLAS])
++AC_DEFUN([AX_BLAS], [
++AC_PREREQ(2.50)
++AC_REQUIRE([AC_F77_LIBRARY_LDFLAGS])
++AC_REQUIRE([AC_CANONICAL_HOST])
++ax_blas_ok=no
++
++AC_ARG_WITH(blas,
++	[AS_HELP_STRING([--with-blas=<lib>], [use BLAS library <lib>])])
++case $with_blas in
++	yes | "") ;;
++	no) ax_blas_ok=disable ;;
++	-* | */* | *.a | *.so | *.so.* | *.o) BLAS_LIBS="$with_blas" ;;
++	*) BLAS_LIBS="-l$with_blas" ;;
++esac
++
++# Get fortran linker names of BLAS functions to check for.
++AC_F77_FUNC(sgemm)
++AC_F77_FUNC(dgemm)
++
++ax_blas_save_LIBS="$LIBS"
++LIBS="$LIBS $FLIBS"
++
++# First, check BLAS_LIBS environment variable
++if test $ax_blas_ok = no; then
++if test "x$BLAS_LIBS" != x; then
++	save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS"
++	AC_MSG_CHECKING([for $sgemm in $BLAS_LIBS])
++	AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes], [BLAS_LIBS=""])
++	AC_MSG_RESULT($ax_blas_ok)
++	LIBS="$save_LIBS"
++fi
++fi
++
++# BLAS linked to by default?  (happens on some supercomputers)
++if test $ax_blas_ok = no; then
++	save_LIBS="$LIBS"; LIBS="$LIBS"
++	AC_MSG_CHECKING([if $sgemm is being linked in already])
++	AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes])
++	AC_MSG_RESULT($ax_blas_ok)
++	LIBS="$save_LIBS"
++fi
++
++# BLAS in OpenBLAS library? (http://xianyi.github.com/OpenBLAS/)
++if test $ax_blas_ok = no; then
++	AC_CHECK_LIB(openblas, $sgemm, [ax_blas_ok=yes
++			                BLAS_LIBS="-lopenblas"])
++fi
++
++# BLAS in ATLAS library? (http://math-atlas.sourceforge.net/)
++if test $ax_blas_ok = no; then
++	AC_CHECK_LIB(atlas, ATL_xerbla,
++		[AC_CHECK_LIB(f77blas, $sgemm,
++		[AC_CHECK_LIB(cblas, cblas_dgemm,
++			[ax_blas_ok=yes
++			 BLAS_LIBS="-lcblas -lf77blas -latlas"],
++			[], [-lf77blas -latlas])],
++			[], [-latlas])])
++fi
++
++# BLAS in PhiPACK libraries? (requires generic BLAS lib, too)
++if test $ax_blas_ok = no; then
++	AC_CHECK_LIB(blas, $sgemm,
++		[AC_CHECK_LIB(dgemm, $dgemm,
++		[AC_CHECK_LIB(sgemm, $sgemm,
++			[ax_blas_ok=yes; BLAS_LIBS="-lsgemm -ldgemm -lblas"],
++			[], [-lblas])],
++			[], [-lblas])])
++fi
++
++# BLAS in Intel MKL library?
++if test $ax_blas_ok = no; then
++	# MKL for gfortran
++	if test x"$ac_cv_fc_compiler_gnu" = xyes; then
++		# 64 bit
++		if test $host_cpu = x86_64; then
++			AC_CHECK_LIB(mkl_gf_lp64, $sgemm,
++			[ax_blas_ok=yes;BLAS_LIBS="-lmkl_gf_lp64 -lmkl_sequential -lmkl_core -lpthread"],,
++			[-lmkl_gf_lp64 -lmkl_sequential -lmkl_core -lpthread])
++		# 32 bit
++		elif test $host_cpu = i686; then
++			AC_CHECK_LIB(mkl_gf, $sgemm,
++				[ax_blas_ok=yes;BLAS_LIBS="-lmkl_gf -lmkl_sequential -lmkl_core -lpthread"],,
++				[-lmkl_gf -lmkl_sequential -lmkl_core -lpthread])
++		fi
++	# MKL for other compilers (Intel, PGI, ...?)
++	else
++		# 64-bit
++		if test $host_cpu = x86_64; then
++			AC_CHECK_LIB(mkl_intel_lp64, $sgemm,
++				[ax_blas_ok=yes;BLAS_LIBS="-lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread"],,
++				[-lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread])
++		# 32-bit
++		elif test $host_cpu = i686; then
++			AC_CHECK_LIB(mkl_intel, $sgemm,
++				[ax_blas_ok=yes;BLAS_LIBS="-lmkl_intel -lmkl_sequential -lmkl_core -lpthread"],,
++				[-lmkl_intel -lmkl_sequential -lmkl_core -lpthread])
++		fi
++	fi
++fi
++# Old versions of MKL
++if test $ax_blas_ok = no; then
++	AC_CHECK_LIB(mkl, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-lmkl -lguide -lpthread"],,[-lguide -lpthread])
++fi
++
++# BLAS in Apple vecLib library?
++if test $ax_blas_ok = no; then
++	save_LIBS="$LIBS"; LIBS="-framework vecLib $LIBS"
++	AC_MSG_CHECKING([for $sgemm in -framework vecLib])
++	AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes;BLAS_LIBS="-framework vecLib"])
++	AC_MSG_RESULT($ax_blas_ok)
++	LIBS="$save_LIBS"
++fi
++
++# BLAS in Alpha CXML library?
++if test $ax_blas_ok = no; then
++	AC_CHECK_LIB(cxml, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-lcxml"])
++fi
++
++# BLAS in Alpha DXML library? (now called CXML, see above)
++if test $ax_blas_ok = no; then
++	AC_CHECK_LIB(dxml, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-ldxml"])
++fi
++
++# BLAS in Sun Performance library?
++if test $ax_blas_ok = no; then
++	if test "x$GCC" != xyes; then # only works with Sun CC
++		AC_CHECK_LIB(sunmath, acosp,
++			[AC_CHECK_LIB(sunperf, $sgemm,
++				[BLAS_LIBS="-xlic_lib=sunperf -lsunmath"
++                                 ax_blas_ok=yes],[],[-lsunmath])])
++	fi
++fi
++
++# BLAS in SCSL library?  (SGI/Cray Scientific Library)
++if test $ax_blas_ok = no; then
++	AC_CHECK_LIB(scs, $sgemm, [ax_blas_ok=yes; BLAS_LIBS="-lscs"])
++fi
++
++# BLAS in SGIMATH library?
++if test $ax_blas_ok = no; then
++	AC_CHECK_LIB(complib.sgimath, $sgemm,
++		     [ax_blas_ok=yes; BLAS_LIBS="-lcomplib.sgimath"])
++fi
++
++# BLAS in IBM ESSL library? (requires generic BLAS lib, too)
++if test $ax_blas_ok = no; then
++	AC_CHECK_LIB(blas, $sgemm,
++		[AC_CHECK_LIB(essl, $sgemm,
++			[ax_blas_ok=yes; BLAS_LIBS="-lessl -lblas"],
++			[], [-lblas $FLIBS])])
++fi
++
++# Generic BLAS library?
++if test $ax_blas_ok = no; then
++	AC_CHECK_LIB(blas, $sgemm, [ax_blas_ok=yes; BLAS_LIBS="-lblas"])
++fi
++
++AC_SUBST(BLAS_LIBS)
++
++LIBS="$ax_blas_save_LIBS"
++
++# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
++if test x"$ax_blas_ok" = xyes; then
++        ifelse([$1],,AC_DEFINE(HAVE_BLAS,1,[Define if you have a BLAS library.]),[$1])
++        :
++else
++        ax_blas_ok=no
++        $2
++fi
++])dnl AX_BLAS
+diff --git a/ax_lapack.m4 b/ax_lapack.m4
+new file mode 100644
+--- /dev/null
++++ b/ax_lapack.m4
+@@ -0,0 +1,131 @@
++# ===========================================================================
++#         http://www.gnu.org/software/autoconf-archive/ax_lapack.html
++# ===========================================================================
++#
++# SYNOPSIS
++#
++#   AX_LAPACK([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]])
++#
++# DESCRIPTION
++#
++#   This macro looks for a library that implements the LAPACK linear-algebra
++#   interface (see http://www.netlib.org/lapack/). On success, it sets the
++#   LAPACK_LIBS output variable to hold the requisite library linkages.
++#
++#   To link with LAPACK, you should link with:
++#
++#     $LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS
++#
++#   in that order. BLAS_LIBS is the output variable of the AX_BLAS macro,
++#   called automatically. FLIBS is the output variable of the
++#   AC_F77_LIBRARY_LDFLAGS macro (called if necessary by AX_BLAS), and is
++#   sometimes necessary in order to link with F77 libraries. Users will also
++#   need to use AC_F77_DUMMY_MAIN (see the autoconf manual), for the same
++#   reason.
++#
++#   The user may also use --with-lapack=<lib> in order to use some specific
++#   LAPACK library <lib>. In order to link successfully, however, be aware
++#   that you will probably need to use the same Fortran compiler (which can
++#   be set via the F77 env. var.) as was used to compile the LAPACK and BLAS
++#   libraries.
++#
++#   ACTION-IF-FOUND is a list of shell commands to run if a LAPACK library
++#   is found, and ACTION-IF-NOT-FOUND is a list of commands to run it if it
++#   is not found. If ACTION-IF-FOUND is not specified, the default action
++#   will define HAVE_LAPACK.
++#
++# LICENSE
++#
++#   Copyright (c) 2009 Steven G. Johnson <stevenj@alum.mit.edu>
++#
++#   This program is free software: you can redistribute it and/or modify it
++#   under the terms of the GNU General Public License as published by the
++#   Free Software Foundation, either version 3 of the License, or (at your
++#   option) any later version.
++#
++#   This program is distributed in the hope that it will be useful, but
++#   WITHOUT ANY WARRANTY; without even the implied warranty of
++#   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
++#   Public License for more details.
++#
++#   You should have received a copy of the GNU General Public License along
++#   with this program. If not, see <http://www.gnu.org/licenses/>.
++#
++#   As a special exception, the respective Autoconf Macro's copyright owner
++#   gives unlimited permission to copy, distribute and modify the configure
++#   scripts that are the output of Autoconf when processing the Macro. You
++#   need not follow the terms of the GNU General Public License when using
++#   or distributing such scripts, even though portions of the text of the
++#   Macro appear in them. The GNU General Public License (GPL) does govern
++#   all other use of the material that constitutes the Autoconf Macro.
++#
++#   This special exception to the GPL applies to versions of the Autoconf
++#   Macro released by the Autoconf Archive. When you make and distribute a
++#   modified version of the Autoconf Macro, you may extend this special
++#   exception to the GPL to apply to your modified version as well.
++
++#serial 7
++
++AU_ALIAS([ACX_LAPACK], [AX_LAPACK])
++AC_DEFUN([AX_LAPACK], [
++AC_REQUIRE([AX_BLAS])
++ax_lapack_ok=no
++
++AC_ARG_WITH(lapack,
++        [AS_HELP_STRING([--with-lapack=<lib>], [use LAPACK library <lib>])])
++case $with_lapack in
++        yes | "") ;;
++        no) ax_lapack_ok=disable ;;
++        -* | */* | *.a | *.so | *.so.* | *.o) LAPACK_LIBS="$with_lapack" ;;
++        *) LAPACK_LIBS="-l$with_lapack" ;;
++esac
++
++# Get fortran linker name of LAPACK function to check for.
++AC_F77_FUNC(cheev)
++
++# We cannot use LAPACK if BLAS is not found
++if test "x$ax_blas_ok" != xyes; then
++        ax_lapack_ok=noblas
++        LAPACK_LIBS=""
++fi
++
++# First, check LAPACK_LIBS environment variable
++if test "x$LAPACK_LIBS" != x; then
++        save_LIBS="$LIBS"; LIBS="$LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS"
++        AC_MSG_CHECKING([for $cheev in $LAPACK_LIBS])
++        AC_TRY_LINK_FUNC($cheev, [ax_lapack_ok=yes], [LAPACK_LIBS=""])
++        AC_MSG_RESULT($ax_lapack_ok)
++        LIBS="$save_LIBS"
++        if test $ax_lapack_ok = no; then
++                LAPACK_LIBS=""
++        fi
++fi
++
++# LAPACK linked to by default?  (is sometimes included in BLAS lib)
++if test $ax_lapack_ok = no; then
++        save_LIBS="$LIBS"; LIBS="$LIBS $BLAS_LIBS $FLIBS"
++        AC_CHECK_FUNC($cheev, [ax_lapack_ok=yes])
++        LIBS="$save_LIBS"
++fi
++
++# Generic LAPACK library?
++for lapack in lapack lapack_rs6k; do
++        if test $ax_lapack_ok = no; then
++                save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS"
++                AC_CHECK_LIB($lapack, $cheev,
++                    [ax_lapack_ok=yes; LAPACK_LIBS="-l$lapack"], [], [$FLIBS])
++                LIBS="$save_LIBS"
++        fi
++done
++
++AC_SUBST(LAPACK_LIBS)
++
++# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
++if test x"$ax_lapack_ok" = xyes; then
++        ifelse([$1],,AC_DEFINE(HAVE_LAPACK,1,[Define if you have LAPACK library.]),[$1])
++        :
++else
++        ax_lapack_ok=no
++        $2
++fi
++])dnl AX_LAPACK
+diff --git a/cholmod.pc.in b/cholmod.pc.in
+new file mode 100644
+--- /dev/null
++++ b/cholmod.pc.in
+@@ -0,0 +1,13 @@
++prefix=@prefix@
++exec_prefix=@exec_prefix@
++libdir=@libdir@
++includedir=@includedir@
++
++Name: @PACKAGE_NAME@
++Description: Sparse Cholesky factorization
++Version: @PACKAGE_VERSION@
++URL: @PACKAGE_URL@
++Requires.private: @CHOLMOD_REQUIRES@
++Libs: -L${libdir} -lcholmod
++Libs.private: @LAPACK_LIBS@ @BLAS_LIBS@ -lm
++Cflags: -I${includedir}/cholmod
+diff --git a/configure.ac b/configure.ac
+new file mode 100644
+--- /dev/null
++++ b/configure.ac
+@@ -0,0 +1,215 @@
++#                                               -*- Autoconf -*-
++# Process this file with autoconf to produce a configure script.
++
++AC_PREREQ([2.69])
++AC_INIT([CHOLMOD],[2.1.2],[DrTimothyAldenDavis@gmail.com],[cholmod],[http://www.suitesparse.com/])
++AC_CONFIG_SRCDIR([Core/cholmod_common.c])
++AC_CONFIG_HEADERS([config.h Include/cholmod_config.h])
++AM_INIT_AUTOMAKE([foreign])
++LT_INIT
++
++# Checks for programs.
++AC_PROG_INSTALL
++AC_PROG_CC
++AC_PROG_F77
++AC_PROG_AWK
++
++AC_MSG_CHECKING([whether to build GPL-licensed modules])
++AC_ARG_ENABLE([gpl-modules],
++	[AS_HELP_STRING(
++		[--disable-gpl-modules],
++		[do not build GPL-licensed modules])],
++	[mod_gpl=$enableval],
++	[mod_gpl="yes"])
++AC_MSG_RESULT([$mod_gpl])
++
++AC_MSG_CHECKING([whether to build mod-check])
++AC_ARG_ENABLE([mod-check],
++	[AS_HELP_STRING(
++		[--disable-mod-check],
++		[do not build the Check module])],
++	[mod_check=$enableval],
++	[mod_check="yes"])
++AC_MSG_RESULT([$mod_check])
++
++AC_MSG_CHECKING([whether to build mod-cholesky])
++AC_ARG_ENABLE([mod-cholesky],
++	[AS_HELP_STRING(
++		[--disable-mod-cholesky],
++		[do not build the Cholesky module])],
++	[mod_cholesky=$enableval],
++	[mod_cholesky="yes"])
++AC_MSG_RESULT([$mod_cholesky])
++
++AC_MSG_CHECKING([whether to build mod-partition])
++AC_ARG_ENABLE([mod-partition],
++	[AS_HELP_STRING(
++		[--disable-mod-partition],
++		[do not build the Partition module])],
++	[mod_partition=$enableval],
++	[mod_partition="yes"])
++AC_MSG_RESULT([$mod_partition])
++
++AC_MSG_CHECKING([whether to build mod-matrixops])
++AC_ARG_ENABLE([mod-matrixops],
++	[AS_HELP_STRING(
++		[--disable-mod-matrixops],
++		[do not build the MatrixOps module])],
++	[mod_matrixops=$enableval],
++	[mod_matrixops=$mod_gpl])
++AC_MSG_RESULT([$mod_matrixops])
++
++AC_MSG_CHECKING([whether to build mod-modify])
++AC_ARG_ENABLE([mod-modify],
++	[AS_HELP_STRING(
++		[--disable-mod-modify],
++		[do not build the Modify module])],
++	[mod_modify=$enableval],
++	[mod_modify=$mod_gpl])
++AC_MSG_RESULT([$mod_modify])
++
++AC_MSG_CHECKING([whether to build mod-supernodal])
++AC_ARG_ENABLE([mod-supernodal],
++	[AS_HELP_STRING(
++		[--disable-mod-supernodal],
++		[do not build the Supernodal module])],
++	[mod_supernodal=$enableval],
++	[mod_supernodal=$mod_gpl])
++AC_MSG_RESULT([$mod_supernodal])
++
++AC_MSG_CHECKING([whether to use timing routines])
++AC_ARG_ENABLE([timing],
++	[AS_HELP_STRING(
++		[--disable-timing],
++		[do not use timing routines])],
++	[timing=$enableval],
++	[timing="yes"])
++AC_MSG_RESULT([$timing])
++
++LIBS_SAVED=$LIBS
++
++# Checks for libraries.
++AC_CHECK_LIB([m], [sqrt])
++
++PKG_PROG_PKG_CONFIG
++PKG_CHECK_MODULES([SUITESPARSECONFIG],[suitesparseconfig],
++	[],
++	[AC_MSG_ERROR([cannot find suitesparseconfig])])
++CHOLMOD_REQUIRES="suitesparseconfig"
++
++if test "x$mod_cholesky" = "xyes"; then
++	PKG_CHECK_MODULES([AMD],[amd],
++		[],
++		[AC_MSG_ERROR([cannot find amd (required by mod-cholesky)])])
++	CHOLMOD_REQUIRES="$CHOLMOD_REQUIRES amd"
++
++	PKG_CHECK_MODULES([COLAMD],[colamd],
++		[],
++		[AC_MSG_ERROR([cannot find colamd (required by mod-cholesky)])])
++	CHOLMOD_REQUIRES="$CHOLMOD_REQUIRES colamd"
++fi
++
++if test "x$mod_partition" = "xyes"; then
++	PKG_CHECK_MODULES([CAMD],[camd],
++		[],
++		[AC_MSG_ERROR([cannot find camd (required by mod-partition)])])
++	CHOLMOD_REQUIRES="$CHOLMOD_REQUIRES camd"
++
++	PKG_CHECK_MODULES([CCOLAMD],[ccolamd],
++		[],
++		[AC_MSG_ERROR([cannot find ccolamd (required by mod-partition)])])
++	CHOLMOD_REQUIRES="$CHOLMOD_REQUIRES ccolamd"
++
++	PKG_CHECK_MODULES([METIS],[metis],
++		[metis="yes"],
++		[metis="no"])
++	if test "x$metis" = "xyes"; then
++		CHOLMOD_REQUIRES="$CHOLMOD_REQUIRES metis"
++	else
++		AC_MSG_WARN([cannot find metis (used by mod-partition), disabling some functionality])
++	fi
++fi
++
++if test "x$mod_supernodal" = "xyes"; then
++	sinclude([ax_blas.m4])
++	AX_BLAS
++	if test "x$ax_blas_ok" != "xyes"; then
++		AC_MSG_ERROR([cannot find blas (required by mod-supernodal)])
++	fi
++
++	sinclude([ax_lapack.m4])
++	AX_LAPACK
++	if test "x$ax_lapack_ok" != "xyes"; then
++		AC_MSG_ERROR([cannot find lapack (required by mod-supernodal)])
++	fi
++fi
++
++# Checks for header files.
++AC_CHECK_HEADERS([float.h limits.h stddef.h stdlib.h string.h])
++
++# Checks for typedefs, structures, and compiler characteristics.
++AC_TYPE_SIZE_T
++
++# Checks for library functions.
++AC_FUNC_MALLOC
++AC_CHECK_FUNCS([sqrt])
++
++LIBS=$LIBS_SAVED
++
++if test "x$mod_check" != "xyes"; then
++	AC_DEFINE([NCHECK], [], [Define to disable the Check module])
++fi
++
++if test "x$mod_cholesky" != "xyes"; then
++	AC_DEFINE([NCHOLESKY], [], [Define to disable the Cholesky module])
++fi
++
++if test "x$mod_partition" != "xyes"; then
++	AC_DEFINE([NCAMD], [], [Define to disable the Partition module])
++fi
++
++if test "x$metis" != "xyes"; then
++	AC_DEFINE([NPARTITION], [], [Define to disable metis support in the Partition module])
++fi
++
++if test "x$mod_gpl" != "xyes"; then
++	AC_DEFINE([NGPL], [], [Define to disable GPL-licensed modules])
++fi
++
++if test "x$mod_matrixops" != "xyes"; then
++	AC_DEFINE([NMATRIXOPS], [], [Define to disable the MatrixOps module])
++fi
++
++if test "x$mod_modify" != "xyes"; then
++	AC_DEFINE([NMODIFY], [], [Define to disable the Modify module])
++fi
++
++if test "x$mod_supernodal" != "xyes"; then
++	AC_DEFINE([NSUPERNODAL], [], [Define to disable the Supernodal module])
++fi
++
++AM_CONDITIONAL([MOD_CHECK], [test "x$mod_check" = "xyes"])
++AM_CONDITIONAL([MOD_CHOLESKY], [test "x$mod_cholesky" = "xyes"])
++AM_CONDITIONAL([MOD_PARTITION], [test "x$mod_partition" = "xyes"])
++AM_CONDITIONAL([MOD_MATRIXOPS], [test "x$mod_matrixops" = "xyes"])
++AM_CONDITIONAL([MOD_MODIFY], [test "x$mod_modify" = "xyes"])
++AM_CONDITIONAL([MOD_SUPERNODAL], [test "x$mod_supernodal" = "xyes"])
++AM_CONDITIONAL([TIMING], [test "x$timing" = "xyes"])
++
++AC_SUBST([CHOLMOD_REQUIRES])
++
++AC_CONFIG_FILES([
++	cholmod.pc
++	Makefile
++	Check/Makefile
++	Cholesky/Makefile
++	Core/Makefile
++	Demo/Makefile
++	Doc/Makefile
++	Include/Makefile
++	MATLAB/Makefile
++	MatrixOps/Makefile
++	Modify/Makefile
++	Partition/Makefile
++	Supernodal/Makefile])
++AC_OUTPUT
diff --git a/academic/cholmod/cholmod.SlackBuild b/academic/cholmod/cholmod.SlackBuild
new file mode 100644
index 0000000000..5197789871
--- /dev/null
+++ b/academic/cholmod/cholmod.SlackBuild
@@ -0,0 +1,113 @@
+#!/bin/sh
+
+# Slackware build script for CHOLMOD
+
+# Copyright 2013 Kyle Guinn <elyk03@gmail.com>, USA
+# All rights reserved.
+#
+# Redistribution and use of this script, with or without modification, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+# notice, this list of conditions and the following disclaimer.
+#
+# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
+# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
+# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+PRGNAM=cholmod
+SRCNAM=CHOLMOD
+VERSION=${VERSION:-2.1.2}
+BUILD=${BUILD:-1}
+TAG=${TAG:-_SBo}
+
+if [ -z "$ARCH" ]; then
+  case "$(uname -m)" in
+    i?86) ARCH=i486 ;;
+    arm*) ARCH=arm ;;
+       *) ARCH=$(uname -m) ;;
+  esac
+fi
+
+CWD=$(pwd)
+TMP=${TMP:-/tmp/SBo}
+PKG=$TMP/package-$PRGNAM
+OUTPUT=${OUTPUT:-/tmp}
+
+DOCS="README.txt Doc/ChangeLog Core/lesser.txt Modify/gpl.txt"
+MODULE_DOCS="Core/License.txt Check/License.txt Cholesky/License.txt Partition/License.txt MatrixOps/License.txt Modify/License.txt Supernodal/License.txt"
+
+if [ "$ARCH" = "i486" ]; then
+  SLKCFLAGS="-O2 -march=i486 -mtune=i686"
+  LIBDIRSUFFIX=""
+elif [ "$ARCH" = "i686" ]; then
+  SLKCFLAGS="-O2 -march=i686 -mtune=i686"
+  LIBDIRSUFFIX=""
+elif [ "$ARCH" = "x86_64" ]; then
+  SLKCFLAGS="-O2 -fPIC"
+  LIBDIRSUFFIX="64"
+else
+  SLKCFLAGS="-O2"
+  LIBDIRSUFFIX=""
+fi
+
+# Recommended by SuiteSparse
+SLKCFLAGS="$SLKCFLAGS -fexceptions -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE"
+
+set -e
+
+rm -rf $PKG
+mkdir -p $TMP $PKG $OUTPUT
+cd $TMP
+rm -rf $SRCNAM
+tar xvf $CWD/$SRCNAM-$VERSION.tar.gz
+cd $SRCNAM
+chown -R root:root .
+find -L . \
+ \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
+  -o -perm 511 \) -exec chmod 755 {} \; -o \
+ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
+ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
+
+patch -p1 < $CWD/autotoolize.diff
+patch -p1 < $CWD/atlas-threaded-blas.diff
+autoreconf -vif
+
+CFLAGS="$SLKCFLAGS" \
+FFLAGS="$SLKCFLAGS" \
+./configure \
+  --prefix=/usr \
+  --libdir=/usr/lib${LIBDIRSUFFIX} \
+  --sysconfdir=/etc \
+  --localstatedir=/var \
+  --mandir=/usr/man \
+  --infodir=/usr/info \
+  --docdir=/usr/doc/$PRGNAM-$VERSION \
+  --enable-shared \
+  --disable-static \
+  --disable-dependency-tracking \
+  --build=$ARCH-slackware-linux
+
+make
+make check
+make install-strip DESTDIR=$PKG
+
+mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
+cp -a $DOCS $PKG/usr/doc/$PRGNAM-$VERSION
+for i in $MODULE_DOCS; do
+  cp -a $i $PKG/usr/doc/$PRGNAM-$VERSION/$(echo $i | tr / _)
+done
+cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
+
+mkdir -p $PKG/install
+cat $CWD/slack-desc > $PKG/install/slack-desc
+
+cd $PKG
+/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
diff --git a/academic/cholmod/cholmod.info b/academic/cholmod/cholmod.info
new file mode 100644
index 0000000000..bcf46bfccf
--- /dev/null
+++ b/academic/cholmod/cholmod.info
@@ -0,0 +1,10 @@
+PRGNAM="cholmod"
+VERSION="2.1.2"
+HOMEPAGE="https://www.cise.ufl.edu/research/sparse/cholmod/"
+DOWNLOAD="https://www.cise.ufl.edu/research/sparse/cholmod/CHOLMOD-2.1.2.tar.gz"
+MD5SUM="0c55ade78bb1b1f1e7b6a6cba024f70d"
+DOWNLOAD_x86_64=""
+MD5SUM_x86_64=""
+REQUIRES="%README% blas lapack suitesparseconfig amd camd colamd ccolamd"
+MAINTAINER="Kyle Guinn"
+EMAIL="elyk03@gmail.com"
diff --git a/academic/cholmod/slack-desc b/academic/cholmod/slack-desc
new file mode 100644
index 0000000000..80766167e4
--- /dev/null
+++ b/academic/cholmod/slack-desc
@@ -0,0 +1,19 @@
+# HOW TO EDIT THIS FILE:
+# The "handy ruler" below makes it easier to edit a package description.
+# Line up the first '|' above the ':' following the base package name, and
+# the '|' on the right side marks the last column you can put a character in.
+# You must make exactly 11 lines for the formatting to be correct.  It's also
+# customary to leave one space after the ':' except on otherwise blank lines.
+
+       |-----handy-ruler------------------------------------------------------|
+cholmod: CHOLMOD (sparse matrix factoring routines)
+cholmod:
+cholmod: CHOLMOD is a set of ANSI C routines for sparse Cholesky
+cholmod: factorization and update/downdate.
+cholmod:
+cholmod:
+cholmod:
+cholmod:
+cholmod:
+cholmod:
+cholmod: