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authorPetar Petrov <ppetrov@paju.oulu.fi>2013-01-13 10:45:08 +0100
committerdsomero <xgizzmo@slackbuilds.org>2013-01-20 09:03:02 -0500
commit1aa1d7bb199f0462c4bd1923160ba917f3442c94 (patch)
tree743df704c47d2e0cb3b1260f78cf47f2bd594949 /academic/cap3/cap3.SlackBuild
parentab46533b5921c6b53b1bac23e99de90d20779895 (diff)
downloadslackbuilds-1aa1d7bb199f0462c4bd1923160ba917f3442c94.tar.gz
academic/cap3: Added (DNA sequence assembly program).
Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
Diffstat (limited to 'academic/cap3/cap3.SlackBuild')
-rw-r--r--academic/cap3/cap3.SlackBuild92
1 files changed, 92 insertions, 0 deletions
diff --git a/academic/cap3/cap3.SlackBuild b/academic/cap3/cap3.SlackBuild
new file mode 100644
index 0000000000..0a18de25cf
--- /dev/null
+++ b/academic/cap3/cap3.SlackBuild
@@ -0,0 +1,92 @@
+#!/bin/sh
+
+# Slackware build script for cap3
+
+# Copyright 2013 Petar Petrov, ppetrov@paju.oulu.fi
+# All rights reserved.
+#
+# Redistribution and use of this script, with or without modification, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+# notice, this list of conditions and the following disclaimer.
+#
+# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
+# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
+# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+PRGNAM=cap3
+VERSION=${VERSION:-20091029} # Use the last modification date as version
+BUILD=${BUILD:-1}
+TAG=${TAG:-_SBo}
+
+if [ -z "$ARCH" ]; then
+ case "$( uname -m )" in
+ i?86) ARCH=i386 ;;
+ arm*) ARCH=arm ;;
+ *) ARCH=$( uname -m ) ;;
+ esac
+fi
+
+CWD=$(pwd)
+TMP=${TMP:-/tmp/SBo}
+PKG=$TMP/package-$PRGNAM
+OUTPUT=${OUTPUT:-/tmp}
+
+set -e
+
+if [ "$ARCH" != "i386" ] && [ "$ARCH" != "x86_64" ]; then
+ printf "\n\n$ARCH is not supported... \n"
+ exit 1
+fi
+
+# Determine the tarball arch
+if [ "$ARCH" = "x86_64" ]; then
+ SRCARCH=".opteron64"
+else
+ SRCARCH=""
+fi
+
+# Construct tarball name
+TARNAME=${PRGNAM}.linux${SRCARCH}
+DIRNAM=CAP3
+
+rm -rf $PKG
+mkdir -p $TMP $PKG $OUTPUT
+cd $TMP
+rm -fr $DIRNAM
+tar xvf $CWD/$TARNAME.tar
+cd $DIRNAM
+chown -R root:root .
+find . \
+ \( -perm 777 -o -perm 775 -o -perm 711 -o -perm 555 -o -perm 511 \) \
+ -exec chmod 755 {} \; -o \
+ \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \
+ -exec chmod 644 {} \;
+
+install -D -m755 $PRGNAM $PKG/usr/bin/$PRGNAM
+install -D -m755 formcon $PKG/usr/bin/formcon
+
+find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
+ | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
+
+mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
+cp -a \
+ aceform doc README \
+ $PKG/usr/doc/$PRGNAM-$VERSION
+cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
+cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References
+cat $CWD/LICENSE > $PKG/usr/doc/$PRGNAM-$VERSION/LICENSE
+
+mkdir -p $PKG/install
+cat $CWD/slack-desc > $PKG/install/slack-desc
+
+cd $PKG
+/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}