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| author | Petar Petrov <ppetrov@paju.oulu.fi> | 2013-01-13 10:45:08 +0100 |
|---|---|---|
| committer | dsomero <xgizzmo@slackbuilds.org> | 2013-01-20 09:03:02 -0500 |
| commit | 1aa1d7bb199f0462c4bd1923160ba917f3442c94 (patch) | |
| tree | 743df704c47d2e0cb3b1260f78cf47f2bd594949 /academic/cap3/README | |
| parent | ab46533b5921c6b53b1bac23e99de90d20779895 (diff) | |
| download | slackbuilds-1aa1d7bb199f0462c4bd1923160ba917f3442c94.tar.gz | |
academic/cap3: Added (DNA sequence assembly program).
Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
Diffstat (limited to 'academic/cap3/README')
| -rw-r--r-- | academic/cap3/README | 14 |
1 files changed, 14 insertions, 0 deletions
diff --git a/academic/cap3/README b/academic/cap3/README new file mode 100644 index 0000000000..62792bb4c7 --- /dev/null +++ b/academic/cap3/README @@ -0,0 +1,14 @@ +CAP3: A DNA sequence assembly program. + +CAP3 if the third generation of the CAP sequence assembly program. The +program has a capability to clip 5' and 3' low-quality regions of reads. +It uses base quality values in computation of overlaps between reads, +construction of multiple sequence alignments of reads, and generation +of consensus sequences. The program also uses forward-reverse constraints +to correct assembly errors and link contigs. + +This just repackages the binaries provided from upstream. + +If you use CAP3 in any published work, please cite: +Huang, X. and Madan, A. (1999) CAP3: A DNA sequence assembly program. +Genome Res., 9, 868-877. |