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authorPetar Petrov <ppetrov@paju.oulu.fi>2013-01-13 10:23:45 +0100
committerdsomero <xgizzmo@slackbuilds.org>2013-01-20 09:03:02 -0500
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downloadslackbuilds-687759e7cdc6f178669b22721a26122d67e1fb6c.tar.gz
academic/bowtie: Added (short read aligner of DNA sequences).
Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
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+Bowtie is an ultrafast, memory-efficient short read aligner geared
+toward quickly aligning large sets of short DNA sequences (reads) to
+large genomes. It aligns 35-base-pair reads to the human genome at a
+rate of 25 million reads per hour on a typical workstation. Bowtie
+indexes the genome with a Burrows-Wheeler index to keep its memory
+footprint small: for the human genome, the index is typically about
+2.2GB (for unpaired alignment) or 2.9GB (for paired-end or colorspace
+alignment). Multiple processors can be used simultaneously to achieve
+greater alignment speed. Bowtie can also output alignments in the
+standard SAM format, allowing Bowtie to interoperate with other tools
+supporting SAM, including the SAMtools consensus, SNP, and indel
+callers.
+
+If you use Bowtie for your published research, please cite:
+Langmead B, Trapnell C, Pop M, Salzberg SL.
+Ultrafast and memory-efficient alignment of short DNA sequences to
+the human genome. Genome Biol 10:R25.