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| author | Petar Petrov <ppetrov@paju.oulu.fi> | 2011-09-27 07:28:20 -0300 |
|---|---|---|
| committer | Niels Horn <niels.horn@slackbuilds.org> | 2011-09-27 07:28:20 -0300 |
| commit | 613fec3f788377366e17e193873d46a7226dc92c (patch) | |
| tree | 879cc70d655b2e06ec2d58953463adcea0ec1450 /academic/PhyML/README | |
| parent | dd5a4d0ced65bf4b2ae801e809eb7f362d9e7b45 (diff) | |
| download | slackbuilds-613fec3f788377366e17e193873d46a7226dc92c.tar.gz | |
academic/PhyML: Updated for version 20110526.
Signed-off-by: Niels Horn <niels.horn@slackbuilds.org>
Diffstat (limited to 'academic/PhyML/README')
| -rw-r--r-- | academic/PhyML/README | 14 |
1 files changed, 10 insertions, 4 deletions
diff --git a/academic/PhyML/README b/academic/PhyML/README index f86217a2ad..59a8afefb5 100644 --- a/academic/PhyML/README +++ b/academic/PhyML/README @@ -1,7 +1,13 @@ -PhyML is a phylogeny software based on the maximum-likelihood -principle. Early PhyML versions used a fast algorithm to perform -Nearest Neighbor Interchanges (NNIs), in order to improve a -reasonable starting tree topology. +PhyML is a software that estimates maximum likelihood phylogenies +from alignments of nucleotide or amino acid sequences. It provides a +wide range of options that were designed to facilitate standard +phylogenetic analyses. The main strengths of PhyML lies in the large +number of substitution models coupled to various options to search +the space of phylogenetic tree topologies, going from very fast and +efficient methods to slower but generally more accurate approaches. +It also implements two methods to evaluate branch supports in a sound +statistical framework (the non-parametric bootstrap and the +approximate likelihood ratio test). For details and citation New Algorithms and Methods to Estimate Maximum-Likelihood |