academic/avogadro: Updated with patches for newer gcc and boost.

Signed-off-by: dsomero <xgizzmo@slackbuilds.org>

5 files changed, 100 insertions, 3 deletions

diff --git a/academic/avogadro/avogadro.SlackBuild b/academic/avogadro/avogadro.SlackBuild
index f8021e664e..009b66ccd8 100644
--- a/academic/avogadro/avogadro.SlackBuild
+++ b/academic/avogadro/avogadro.SlackBuild
@@ -6,7 +6,7 @@
 
 PRGNAM=avogadro
 VERSION=1.0.3
-BUILD=${BUILD:-1}
+BUILD=${BUILD:-2}
 TAG=${TAG:-_SBo}
 
 if [ -z "$ARCH" ]; then
@@ -51,6 +51,13 @@ find . \
  \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \
  -exec chmod 644 {} \;
 
+# Fix gcc-4.7.x build issues.
+patch -p1 < $CWD/patches/gcc-4.7.patch
+# Fix for newer boost.
+patch -p1 < $CWD/patches/boost-1.48.patch
+# Fix mkspecs directory.
+patch -p1 < $CWD/patches/avogadro-1.0.3-mkspecs-dir.patch
+
 # Fix manpage directory.
 sed -i 's|share/man|man|' doc/CMakeLists.txt
 
@@ -63,7 +70,7 @@ cd build
     -DLIB_SUFFIX=${LIBDIRSUFFIX} \
     -DENABLE_RPATH=OFF \
     -DCMAKE_SKIP_RPATH=YES \
-    -DENABLE_GLSL=ON \
+    -DENABLE_GLSL:BOOL=ON \
     -DENABLE_UPDATE_CHECKER=OFF \
     -DCMAKE_BUILD_TYPE=Release ..
 
diff --git a/academic/avogadro/avogadro.info b/academic/avogadro/avogadro.info
index 26775e2226..210dca5f17 100644
--- a/academic/avogadro/avogadro.info
+++ b/academic/avogadro/avogadro.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
 MD5SUM_x86_64=""
 MAINTAINER="Larry Hajali"
 EMAIL="larryhaja[at]gmail[dot]com"
-APPROVED="dsomero,Niels Horn"
+APPROVED="dsomero"
diff --git a/academic/avogadro/patches/avogadro-1.0.3-mkspecs-dir.patch b/academic/avogadro/patches/avogadro-1.0.3-mkspecs-dir.patch
new file mode 100644
index 0000000000..a1e9ec92bd
--- /dev/null
+++ b/academic/avogadro/patches/avogadro-1.0.3-mkspecs-dir.patch
@@ -0,0 +1,12 @@
+diff -ur avogadro-1.0.3/CMakeLists.txt avogadro-1.0.3-mkspecs-dir/CMakeLists.txt
+--- avogadro-1.0.3/CMakeLists.txt	2011-04-25 07:29:58.000000000 +0200
++++ avogadro-1.0.3-mkspecs-dir/CMakeLists.txt	2011-04-27 02:42:26.000000000 +0200
+@@ -491,7 +491,7 @@
+ if(QT_MKSPECS_DIR AND INSTALL_QMAKE_PRF)
+     install(FILES
+       "${CMAKE_CURRENT_BINARY_DIR}/avogadro.prf"
+-      DESTINATION "${CMAKE_INSTALL_PREFIX}/${QT_MKSPECS_RELATIVE}/features"
++      DESTINATION "${QT_MKSPECS_DIR}/features"
+     )
+ else(QT_MKSPECS_DIR AND INSTALL_QMAKE_PRF)
+   message(WARNING "Qt mkspecs directory not found. File 'avogadro.prf' will be installed to ${SHARE_INSTALL_PREFIX}/avogadro/qmake.")
diff --git a/academic/avogadro/patches/boost-1.48.patch b/academic/avogadro/patches/boost-1.48.patch
new file mode 100644
index 0000000000..380af0c938
--- /dev/null
+++ b/academic/avogadro/patches/boost-1.48.patch
@@ -0,0 +1,56 @@
+diff -Naur avogadro-1.0.3.orig/libavogadro/src/extensions/pythonterminal.h avogadro-1.0.3/libavogadro/src/extensions/pythonterminal.h
+--- avogadro-1.0.3.orig/libavogadro/src/extensions/pythonterminal.h	2011-04-25 05:22:18.000000000 +0000
++++ avogadro-1.0.3/libavogadro/src/extensions/pythonterminal.h	2012-07-12 02:35:19.324975289 +0000
+@@ -23,6 +23,10 @@
+ #ifndef PYTHONTERMINAL_H
+ #define PYTHONTERMINAL_H
+ 
++#ifdef Q_MOC_RUN
++#define BOOST_TT_HAS_OPERATOR_HPP_INCLUDED
++#endif
++
+ #include <avogadro/extension.h>
+ #include <avogadro/primitive.h>
+ #include <avogadro/glwidget.h>
+diff -Naur avogadro-1.0.3.orig/libavogadro/src/pythonengine_p.h avogadro-1.0.3/libavogadro/src/pythonengine_p.h
+--- avogadro-1.0.3.orig/libavogadro/src/pythonengine_p.h	2011-04-25 05:22:18.000000000 +0000
++++ avogadro-1.0.3/libavogadro/src/pythonengine_p.h	2012-07-12 02:32:39.429980751 +0000
+@@ -25,6 +25,10 @@
+ #ifndef PYTHONENGINE_H
+ #define PYTHONENGINE_H
+ 
++#ifdef Q_MOC_RUN
++#define BOOST_TT_HAS_OPERATOR_HPP_INCLUDED
++#endif
++
+ #include <avogadro/global.h>
+ #include <avogadro/engine.h>
+ #include <boost/python.hpp>
+diff -Naur avogadro-1.0.3.orig/libavogadro/src/pythonextension_p.h avogadro-1.0.3/libavogadro/src/pythonextension_p.h
+--- avogadro-1.0.3.orig/libavogadro/src/pythonextension_p.h	2011-04-25 05:22:18.000000000 +0000
++++ avogadro-1.0.3/libavogadro/src/pythonextension_p.h	2012-07-12 02:33:46.838978444 +0000
+@@ -26,6 +26,10 @@
+ #ifndef PYTHONEXTENSION_H
+ #define PYTHONEXTENSION_H
+ 
++#ifdef Q_MOC_RUN
++#define BOOST_TT_HAS_OPERATOR_HPP_INCLUDED
++#endif
++
+ #include <avogadro/extension.h>
+ #include <avogadro/primitive.h>
+ #include <avogadro/glwidget.h>
+diff -Naur avogadro-1.0.3.orig/libavogadro/src/pythontool_p.h avogadro-1.0.3/libavogadro/src/pythontool_p.h
+--- avogadro-1.0.3.orig/libavogadro/src/pythontool_p.h	2011-04-25 05:22:18.000000000 +0000
++++ avogadro-1.0.3/libavogadro/src/pythontool_p.h	2012-07-12 02:34:14.068977512 +0000
+@@ -25,6 +25,10 @@
+ #ifndef PYTHONTOOL_H
+ #define PYTHONTOOL_H
+ 
++#ifdef Q_MOC_RUN
++#define BOOST_TT_HAS_OPERATOR_HPP_INCLUDED
++#endif
++
+ #include <avogadro/global.h>
+ #include <avogadro/tool.h>
+ #include <boost/python.hpp>
diff --git a/academic/avogadro/patches/gcc-4.7.patch b/academic/avogadro/patches/gcc-4.7.patch
new file mode 100644
index 0000000000..ffa4cd9439
--- /dev/null
+++ b/academic/avogadro/patches/gcc-4.7.patch
@@ -0,0 +1,22 @@
+diff -Naur avogadro-1.0.3.orig/avogadro/src/mainwindow.h avogadro-1.0.3/avogadro/src/mainwindow.h
+--- avogadro-1.0.3.orig/avogadro/src/mainwindow.h	2011-04-25 05:22:18.000000000 +0000
++++ avogadro-1.0.3/avogadro/src/mainwindow.h	2012-07-11 13:57:36.624006453 +0000
+@@ -24,6 +24,7 @@
+ #ifndef MAINWINDOW_H
+ #define MAINWINDOW_H
+ 
++#include <cstddef>
+ #include <Eigen/Geometry>
+ #include "ui_mainwindow.h"
+ #include "flattabwidget.h"
+diff -Naur avogadro-1.0.3.orig/libavogadro/src/tools/eyecandy.h avogadro-1.0.3/libavogadro/src/tools/eyecandy.h
+--- avogadro-1.0.3.orig/libavogadro/src/tools/eyecandy.h	2011-04-25 05:22:18.000000000 +0000
++++ avogadro-1.0.3/libavogadro/src/tools/eyecandy.h	2012-07-11 13:43:22.892050693 +0000
+@@ -25,6 +25,7 @@
+ #ifndef EYECANDY_H
+ #define EYECANDY_H
+ 
++#include <cstddef>
+ #include <Eigen/Core>
+ 
+ namespace Avogadro {