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authorPetar Petrov <slackalaxy@gmail.com>2020-01-04 23:27:08 -0600
committerWilly Sudiarto Raharjo <willysr@slackbuilds.org>2020-01-12 08:47:59 +0700
commit45a9194a36479dfdc2387d60b74b882bb7cb3d46 (patch)
treef021cbdcd75d22b8fc4b30975e364c716e08b3cd
parent86d36a83fe9ca0fda98f6c067ee86763a52f691f (diff)
downloadslackbuilds-45a9194a36479dfdc2387d60b74b882bb7cb3d46.tar.gz
academic/diamond: Updated for version 0.9.29.
Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
-rw-r--r--academic/diamond/README12
-rw-r--r--academic/diamond/diamond.SlackBuild4
-rw-r--r--academic/diamond/diamond.info10
3 files changed, 13 insertions, 13 deletions
diff --git a/academic/diamond/README b/academic/diamond/README
index a5c66d0988..07af60110e 100644
--- a/academic/diamond/README
+++ b/academic/diamond/README
@@ -11,22 +11,22 @@ features are:
as well as taxonomic classification.
To now run an alignment task, we assume to have a protein database file
-in FASTA format named `nr.faa` and a file of DNA reads that we want to
-align named `reads.fna`.
+in FASTA format named 'nr.faa' and a file of DNA reads that we want to
+align named 'reads.fna'.
-In order to set up a reference database for DIAMOND, the `makedb`
+In order to set up a reference database for DIAMOND, the 'makedb'
command needs to be executed with the following command line:
$ diamond makedb --in nr.faa -d nr
This will create a binary DIAMOND database file with the specified name
-(`nr.dmnd`). The alignment task may then be initiated using the `blastx`
+('nr.dmnd'). The alignment task may then be initiated using the 'blastx'
command like this:
$ diamond blastx -d nr -q reads.fna -o matches.m8
-The output file here is specified with the `–o` option and named
-`matches.m8`. By default, it is generated in BLAST tabular format.
+The output file here is specified with the '-o' option and named
+'matches.m8'. By default, it is generated in BLAST tabular format.
Publication:
Buchfink B, Xie C, Huson DH, "Fast and sensitive protein alignment using
diff --git a/academic/diamond/diamond.SlackBuild b/academic/diamond/diamond.SlackBuild
index 28d34e3a88..06d783043f 100644
--- a/academic/diamond/diamond.SlackBuild
+++ b/academic/diamond/diamond.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for diamond
-# Copyright 2018-2019 Petar Petrov slackalaxy@gmail.com
+# Copyright 2018-2020 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
@@ -23,7 +23,7 @@
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=diamond
-VERSION=${VERSION:-0.9.25}
+VERSION=${VERSION:-0.9.29}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
diff --git a/academic/diamond/diamond.info b/academic/diamond/diamond.info
index ecd606884a..e94f42b60b 100644
--- a/academic/diamond/diamond.info
+++ b/academic/diamond/diamond.info
@@ -1,10 +1,10 @@
PRGNAM="diamond"
-VERSION="0.9.25"
+VERSION="0.9.29"
HOMEPAGE="https://github.com/bbuchfink/diamond"
-DOWNLOAD="https://github.com/bbuchfink/diamond/archive/v0.9.25/diamond-0.9.25.tar.gz"
-MD5SUM="3e8e11e63e174b34f330bc72db9421dd"
-DOWNLOAD_x86_64=""
-MD5SUM_x86_64=""
+DOWNLOAD="UNSUPPORTED"
+MD5SUM=""
+DOWNLOAD_x86_64="https://github.com/bbuchfink/diamond/archive/v0.9.29/diamond-0.9.29.tar.gz"
+MD5SUM_x86_64="c9a1cb0f2128e621695f7ee0a05c2af8"
REQUIRES=""
MAINTAINER="Petar Petrov"
EMAIL="slackalaxy@gmail.com"