academic/meme-db-motif: Added (MEME Suite motif databases)

Signed-off-by: Robby Workman <rworkman@slackbuilds.org>

4 files changed, 122 insertions, 0 deletions

diff --git a/academic/meme-db-motif/README b/academic/meme-db-motif/README
new file mode 100644
index 0000000000..8eb4772731
--- /dev/null
+++ b/academic/meme-db-motif/README
@@ -0,0 +1,28 @@
+Motif Databases (updated 28 Oct 2019) to be used with MEME Suite:
+
+Eukaryote DNA (13 Databases)
+Prokaryote DNA (4 Databases)
+Methylcytosine DNA (1 Databases)
+JASPAR (NON-REDUNDANT) DNA (21 Databases)
+JASPAR (REDUNDANT) DNA (21 Databases)
+JASPAR COLLECTIONS DNA (5 Databases)
+TFBSshape DNA (3 Databases)
+CIS-BP Single Species DNA (321 Databases)
+ARABIDOPSIS (Arabidopsis thaliana) DNA (2 Databases)
+ECOLI (Escherichia coli) DNA (2 Databases)
+FLY (Drosophila melanogaster) DNA (6 Databases)
+HUMAN (Homo sapiens) DNA (4 Databases)
+MALARIA (Plasmodia falciparum) DNA (1 Databases)
+MOUSE (Mus musculus) DNA (5 Databases)
+WORM (Caenorhabditis elegans) DNA (1 Databases)
+YEAST (Saccharomyces_cerevisiae) DNA (6 Databases)
+CISBP-RNA Single Species RNA (268 Databases)
+CISBP-RNA Single Species RNA (DNA-encoded) (268 Databases)
+RNA (25 Databases)
+RNA (DNA-encoded) (25 Databases)
+miRBase Single Species microRNA (223 Databases)
+miRBase Single Species microRNA (DNA-encoded) (223 Databases)
+Protein Motifs (2 Databases)
+
+Note!
+The unarchived size of this is ~140 MB
diff --git a/academic/meme-db-motif/meme-db-motif.SlackBuild b/academic/meme-db-motif/meme-db-motif.SlackBuild
new file mode 100644
index 0000000000..f0e266d8c8
--- /dev/null
+++ b/academic/meme-db-motif/meme-db-motif.SlackBuild
@@ -0,0 +1,65 @@
+#!/bin/sh
+
+# Slackware build script for meme-db-motif
+
+# Copyright 2020 Petar Petrov slackalaxy@gmail.com
+# All rights reserved.
+#
+# Redistribution and use of this script, with or without modification, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+#    notice, this list of conditions and the following disclaimer.
+#
+#  THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
+#  WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+#  MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO
+#  EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+#  SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+#  PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+#  OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+#  WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+#  OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+#  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+PRGNAM=meme-db-motif
+VERSION=${VERSION:-12.19}
+BUILD=${BUILD:-1}
+TAG=${TAG:-_SBo}
+
+SRCNAM=motif_databases
+
+ARCH=noarch
+
+CWD=$(pwd)
+TMP=${TMP:-/tmp/SBo}
+PKG=$TMP/package-$PRGNAM
+OUTPUT=${OUTPUT:-/tmp}
+
+set -e
+
+rm -rf $PKG
+mkdir -p $TMP $PKG $OUTPUT
+cd $PKG
+
+# Extract directly in the $PKG folder
+mkdir -p var/lib/meme-suite
+cd var/lib/meme-suite
+tar xvf $CWD/${SRCNAM}.${VERSION}.tgz
+cd $SRCNAM
+
+chown -R root:root .
+find -L . \
+ \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
+  -o -perm 511 \) -exec chmod 755 {} \; -o \
+ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
+  -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
+
+mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
+cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
+
+mkdir -p $PKG/install
+cat $CWD/slack-desc > $PKG/install/slack-desc
+
+cd $PKG
+/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
diff --git a/academic/meme-db-motif/meme-db-motif.info b/academic/meme-db-motif/meme-db-motif.info
new file mode 100644
index 0000000000..549263ca24
--- /dev/null
+++ b/academic/meme-db-motif/meme-db-motif.info
@@ -0,0 +1,10 @@
+PRGNAM="meme-db-motif"
+VERSION="12.19"
+HOMEPAGE="http://meme-suite.org/db/motifs"
+DOWNLOAD="http://meme-suite.org/meme-software/Databases/motifs/motif_databases.12.19.tgz"
+MD5SUM="f5ffcaecc07570ee19dba20b82d7bd73"
+DOWNLOAD_x86_64=""
+MD5SUM_x86_64=""
+REQUIRES=""
+MAINTAINER="Petar Petrov"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/meme-db-motif/slack-desc b/academic/meme-db-motif/slack-desc
new file mode 100644
index 0000000000..351fbd8db9
--- /dev/null
+++ b/academic/meme-db-motif/slack-desc
@@ -0,0 +1,19 @@
+# HOW TO EDIT THIS FILE:
+# The "handy ruler" below makes it easier to edit a package description.
+# Line up the first '|' above the ':' following the base package name, and
+# the '|' on the right side marks the last column you can put a character in.
+# You must make exactly 11 lines for the formatting to be correct.  It's also
+# customary to leave one space after the ':' except on otherwise blank lines.
+
+             |-----handy-ruler------------------------------------------------------|
+meme-db-motif: meme-db-motif (MEME Suite motif databases)
+meme-db-motif:
+meme-db-motif: Motif Databases to be used with MEME Suite.
+meme-db-motif:
+meme-db-motif:
+meme-db-motif:
+meme-db-motif:
+meme-db-motif:
+meme-db-motif:
+meme-db-motif:
+meme-db-motif: