academic/PhyML: Updated for version 20120412.

Signed-off-by: dsomero <xgizzmo@slackbuilds.org>

4 files changed, 23 insertions, 23 deletions

diff --git a/academic/PhyML/PhyML.SlackBuild b/academic/PhyML/PhyML.SlackBuild
index 08ee51b623..0ebc5df826 100644
--- a/academic/PhyML/PhyML.SlackBuild
+++ b/academic/PhyML/PhyML.SlackBuild
@@ -2,7 +2,7 @@
 
 # Slackware build script for PhyML
 
-# Copyright 2011  Petar Petrov, ppetrov@paju.oulu.fi
+# Copyright 2011-2012  Petar Petrov, ppetrov@paju.oulu.fi
 # All rights reserved.
 #
 # Redistribution and use of this script, with or without modification, is
@@ -24,10 +24,10 @@
 
 # Thanks to Niels Horn for some handy modifications and corrections.
 
-PRGNAM=PhyML		
-VERSION=${VERSION:-20110919}
+PRGNAM=PhyML
+VERSION=${VERSION:-20120412}
 BUILD=${BUILD:-1}
-TAG=${TAG:-_SBo}	
+TAG=${TAG:-_SBo}
 
 SRCNAM=$(echo $PRGNAM | tr A-Z a-z)
 
@@ -96,7 +96,7 @@ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | gr
 
 mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
 cp -a \
-  doc/$SRCNAM-manual-$VERSION.pdf AUTHORS ChangeLog COPYING INSTALL README \
+  doc/$SRCNAM-manual-20120306.pdf AUTHORS ChangeLog COPYING INSTALL README \
   $PKG/usr/doc/$PRGNAM-$VERSION
 cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
 cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References
diff --git a/academic/PhyML/PhyML.info b/academic/PhyML/PhyML.info
index 334dc43132..0fe503141c 100644
--- a/academic/PhyML/PhyML.info
+++ b/academic/PhyML/PhyML.info
@@ -1,10 +1,10 @@
 PRGNAM="PhyML"
-VERSION="20110919"
+VERSION="20120412"
 HOMEPAGE="http://code.google.com/p/phyml/"
-DOWNLOAD="http://phyml.googlecode.com/files/phyml-20110919.tar.gz"
-MD5SUM="d95c73c5c03d082db21564a54978f281"
+DOWNLOAD="http://phyml.googlecode.com/files/phyml-20120412.tar.gz"
+MD5SUM="d2207a3d6caf633c43239a01ce70f244"
 DOWNLOAD_x86_64=""
 MD5SUM_x86_64=""
 MAINTAINER="Petar Petrov"
 EMAIL="ppetrov@paju.oulu.fi"
-APPROVED="rworkman"
+APPROVED="dsomero"
diff --git a/academic/PhyML/README b/academic/PhyML/README
index 87e9b170db..b52080e622 100644
--- a/academic/PhyML/README
+++ b/academic/PhyML/README
@@ -1,16 +1,16 @@
-PhyML is a software that estimates maximum likelihood phylogenies 
-from alignments of nucleotide or amino acid sequences. It provides a 
-wide range of options that were designed to facilitate standard 
-phylogenetic analyses. The main strengths of PhyML lies in the large 
-number of substitution models coupled to various options to search 
-the space of phylogenetic tree topologies, going from very fast and 
-efficient methods to slower but generally more accurate approaches. 
-It also implements two methods to evaluate branch supports in a sound 
-statistical framework (the non-parametric bootstrap and the 
+PhyML is a software that estimates maximum likelihood phylogenies
+from alignments of nucleotide or amino acid sequences. It provides a
+wide range of options that were designed to facilitate standard
+phylogenetic analyses. The main strengths of PhyML lies in the large
+number of substitution models coupled to various options to search
+the space of phylogenetic tree topologies, going from very fast and
+efficient methods to slower but generally more accurate approaches.
+It also implements two methods to evaluate branch supports in a sound
+statistical framework (the non-parametric bootstrap and the
 approximate likelihood ratio test).
 
 For details and citation
-New Algorithms and Methods to Estimate Maximum-Likelihood 
-Phylogenies: Assessing the Performance of PhyML 3.0. Guindon S., 
-Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O. 
+New Algorithms and Methods to Estimate Maximum-Likelihood
+Phylogenies: Assessing the Performance of PhyML 3.0. Guindon S.,
+Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O.
 Systematic Biology, 59(3):307-21, 2010.
diff --git a/academic/PhyML/slack-desc b/academic/PhyML/slack-desc
index be2d634abf..3b074e913c 100644
--- a/academic/PhyML/slack-desc
+++ b/academic/PhyML/slack-desc
@@ -9,8 +9,8 @@
 PhyML: PhyML (Phylogenetic estimation using Maximum Likelihood)
 PhyML:
 PhyML: PhyML is a software that estimates maximum likelihood phylogenies
-PhyML: from alignments of nucleotide or amino acid sequences. It provides
-PhyML: a wide range of options that were designed to facilitate standard
+PhyML: from alignments of nucleotide or amino acid sequences. It provides a
+PhyML: wide range of options that were designed to facilitate standard
 PhyML: phylogenetic analyses.
 PhyML:
 PhyML: References: /usr/doc/PhyML-$VERSION/References