academic/mafft: Updated for version 7.037.

Signed-off-by: dsomero <xgizzmo@slackbuilds.org>

3 files changed, 39 insertions, 39 deletions

diff --git a/academic/mafft/References b/academic/mafft/References
index 62541ce9e8..3ec3ebe6ac 100644
--- a/academic/mafft/References
+++ b/academic/mafft/References
@@ -1,35 +1,35 @@
-- Katoh, Frith 2012 (Bioinformatics Advance Access)
-  Adding unaligned sequences into an existing alignment using MAFFT
-  and LAST.
-  (describes the --add and --addfragments options)
-- Katoh, Toh 2010 (Bioinformatics 26:1899-1900)
-  Parallelization of the MAFFT multiple sequence alignment program.
-  (describes the multithread version)
-- Katoh, Asimenos, Toh 2009 (Methods in Molecular Biology 537:39-64)
-  Multiple Alignment of DNA Sequences with MAFFT. In Bioinformatics
-  for DNA Sequence Analysis edited by D. Posada
-  (outlines DNA alignment methods and several tips including
-  group-to-group alignment and rough clustering of a large
-  number of sequences)
-- Katoh, Toh 2008 (BMC Bioinformatics 9:212)
-  Improved accuracy of multiple ncRNA alignment by incorporating
-  structural information into a MAFFT-based framework.
-  (describes RNA structural alignment methods)
-- Katoh, Toh 2008 (Briefings in Bioinformatics 9:286-298)
-  Recent developments in the MAFFT multiple sequence alignment
-  program.
-  (outlines version 6; Fast Breaking Paper in Thomson Reuters'
-  ScienceWatch)
-- Katoh, Toh 2007 (Bioinformatics 23:372-374)  Errata
-  PartTree: an algorithm to build an approximate tree from a large
-  number of unaligned sequences.
-  (describes the PartTree algorithm)
-- Katoh, Kuma, Toh, Miyata 2005 (Nucleic Acids Res. 33:511-518)
-  MAFFT version 5: improvement in accuracy of multiple sequence
-  alignment.
-  (describes [ancestral versions of] the G-INS-i, L-INS-i and
-  E-INS-i strategies)
-- Katoh, Misawa, Kuma, Miyata 2002 (Nucleic Acids Res. 30:3059-3066)
-  MAFFT: a novel method for rapid multiple sequence alignment based
-  on fast Fourier transform.
-  (describes the FFT-NS-1, FFT-NS-2 and FFT-NS-i strategies) 
+Katoh, Standley 2013 (Molecular Biology and Evolution 30:772-780)
+MAFFT multiple sequence alignment software version 7: improvements in performance and usability.
+(outlines version 7)
+
+Katoh, Frith 2012 (Bioinformatics 28:3144-3146)
+Adding unaligned sequences into an existing alignment using MAFFT and LAST.
+(describes the --add and --addfragments options)
+
+Katoh, Toh 2010 (Bioinformatics 26:1899-1900)
+Parallelization of the MAFFT multiple sequence alignment program.
+(describes the multithread version)
+
+Katoh, Asimenos, Toh 2009 (Methods in Molecular Biology 537:39-64)
+Multiple Alignment of DNA Sequences with MAFFT. In Bioinformatics for DNA Sequence Analysis edited by D. Posada
+(outlines DNA alignment methods and several tips including group-to-group alignment and rough clustering of a large number of sequences)
+
+Katoh, Toh 2008 (BMC Bioinformatics 9:212)
+Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework.
+(describes RNA structural alignment methods)
+
+Katoh, Toh 2008 (Briefings in Bioinformatics 9:286-298)
+Recent developments in the MAFFT multiple sequence alignment program.
+(outlines version 6; Fast Breaking Paper in Thomson Reuters' ScienceWatch)
+
+Katoh, Toh 2007 (Bioinformatics 23:372-374)  Errata
+PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences.
+(describes the PartTree algorithm)
+
+Katoh, Kuma, Toh, Miyata 2005 (Nucleic Acids Res. 33:511-518)
+MAFFT version 5: improvement in accuracy of multiple sequence alignment.
+(describes [ancestral versions of] the G-INS-i, L-INS-i and E-INS-i strategies)
+
+Katoh, Misawa, Kuma, Miyata 2002 (Nucleic Acids Res. 30:3059-3066)
+MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.
+(describes the FFT-NS-1, FFT-NS-2 and FFT-NS-i strategies) 
diff --git a/academic/mafft/mafft.SlackBuild b/academic/mafft/mafft.SlackBuild
index 9dee798f39..c39e568aa3 100644
--- a/academic/mafft/mafft.SlackBuild
+++ b/academic/mafft/mafft.SlackBuild
@@ -23,7 +23,7 @@
 #  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
 PRGNAM=mafft
-VERSION=${VERSION:-6.953}
+VERSION=${VERSION:-7.037}
 BUILD=${BUILD:-1}
 TAG=${TAG:-_SBo}
 
diff --git a/academic/mafft/mafft.info b/academic/mafft/mafft.info
index d72e1f0e90..5885262d21 100644
--- a/academic/mafft/mafft.info
+++ b/academic/mafft/mafft.info
@@ -1,8 +1,8 @@
 PRGNAM="mafft"
-VERSION="6.953"
+VERSION="7.037"
 HOMEPAGE="http://mafft.cbrc.jp/alignment/software/"
-DOWNLOAD="http://mafft.cbrc.jp/alignment/software/mafft-6.953-with-extensions-src.tgz"
-MD5SUM="5ce2e3c5b97fb86aac90262191d61df3"
+DOWNLOAD="http://mafft.cbrc.jp/alignment/software/mafft-7.037-with-extensions-src.tgz"
+MD5SUM="dfa90adaff82e6819458ecbacb96e27b"
 DOWNLOAD_x86_64=""
 MD5SUM_x86_64=""
 REQUIRES=""